title: Genomic characterization of CD84 reveals the existence of five isoforms differing in their cytoplasmic domains.
abstract: CD84, a new member of the immunoglobulin superfamily, shows high homology with several molecules belonging to the CD2 family of differentiation antigens. By screening a peripheral blood leukocyte cDNA library four CD84 isoforms were obtained differing in their 3' sequence. A reverse transcription-polymerase chain reaction (RT-PCR) analysis confirmed that these isoforms were normally found on leukocytes and a new isoform was identified. To establish the nature of the five isoforms obtained (CD84a, CD84b, CD84c, CD84d and CD84e) the genomic structure of the CD84 gene was determined. Our results show that it is composed of at least eight exons, with an exon coding for the 5' UTR and the leader peptide, two exons coding for each of the two immunoglobulin-like domains, an exon encoding the transmembrane portion and four exons coding for the cytoplasmic domains. The isoforms are generated by several mechanisms: alternative use of exons, reading frame shift, use of a cryptic splice site or absence of splicing. The differential expression of several potentially phosphorylatable residues on the different isoforms could be a way to regulate its possible activity in signal transduction.
authors.affiliation: Servei d'Immunologia, Hospital Clínic, Barcelona, Spain.
authors.forename: E
authors.initials: E
authors.lastname: Palou
authors.forename: F
authors.initials: F
authors.lastname: Pirotto
authors.forename: J
authors.initials: J
authors.lastname: Solé
authors.forename: J H
authors.initials: JH
authors.lastname: Freed
authors.forename: B
authors.initials: B
authors.lastname: Peral
authors.forename: C
authors.initials: C
authors.lastname: Vilardell
authors.forename: R
authors.initials: R
authors.lastname: Vilella
authors.forename: J
authors.initials: J
authors.lastname: Vives
authors.forename: A
authors.initials: A
authors.lastname: Gayá
mesh_terms: D000595:Amino Acid Sequence; D015703:Antigens, CD / Q000235:genetics* / Q000378:metabolism; D001483:Base Sequence; D001665:Binding Sites; D003001:Cloning, Molecular; D003593:Cytoplasm / Q000378:metabolism; D018076:DNA, Complementary; D015870:Gene Expression; D006801:Humans; D008562:Membrane Glycoproteins; D008969:Molecular Sequence Data; D020033:Protein Isoforms / Q000235:genetics / Q000378:metabolism; D017386:Sequence Homology, Amino Acid; D012689:Sequence Homology, Nucleic Acid; D000071176:Signaling Lymphocytic Activation Molecule Family
chemical_list: D015703:Antigens, CD; C498970:CD84 protein, human; D018076:DNA, Complementary; D008562:Membrane Glycoproteins; D020033:Protein Isoforms; D000071176:Signaling Lymphocytic Activation Molecule Family