Sausage: protein threading with flexible force fields.
Sausage is a protein sequence threading program, but with remarkable run-time flexibility. Using different scripts, it can calculate protein sequence-structure alignments, search structure libraries, swap force fields, create models from alignments, convert file formats and analyse results. There are several different force fields which might be classed as knowledge-based, although they do not rely on Boltzmann statistics. Different force fields are used for alignment calculations and subsequent ranking of calculated models.
Huber
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Research School of Chemistry, Australian National University, Canberra, Australia.
Russell
A J
AJ
Ayers
D
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Torda
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AE
D000465:Algorithms; D001185:Artificial Intelligence; D016208:Databases, Factual; D017510:Protein Folding; D011506:Proteins / Q000737:chemistry*; D016415:Sequence Alignment; D012984:Software
D011506:Proteins