title: Genetic diversity and biological control activity of novel species of closely related pseudomonads isolated from wheat field soils in South Australia.
abstract: Rhizobacteria closely related to two recently described species of pseudomonads, Pseudomonas brassicacearum and Pseudomonas thivervalensis, were isolated from two geographically distinct wheat field soils in South Australia. Isolation was undertaken by either selective plating or immunotrapping utilizing a polyclonal antibody raised against P. brassicacearum. A subset of 42 isolates were characterized by amplified 16S ribosomal DNA restriction analysis (ARDRA), BIOLOG analysis, and gas chromatography-fatty acid methyl ester (GC-FAME) analysis and separated into closely related phenetic groups. More than 75% of isolates tested by ARDRA were found to have >95% similarity to either Pseudomonas corrugata or P. brassicacearum-P. thivervalensis type strains, and all isolates had >90% similarity to either type strain. BIOLOG and GC-FAME clustering showed a >70% match to ARDRA profiles. Strains representing different ARDRA groups were tested in two soil types for biological control activity against the soilborne plant pathogen Gaeumannomyces graminis var. tritici, the causative agent of take-all of wheat and barley. Three isolates out of 11 significantly reduced take-all-induced root lesions on wheat plants grown in a red-brown earth soil. Only one strain, K208, was consistent in reducing disease symptoms in both the acidic red-brown earth and a calcareous sandy loam. Results from this study indicate that P. brassicacearum and P. thivervalensis are present in Australian soils and that a level of genetic diversity exists within these two novel species but that this diversity does not appear to be related to geographic distribution. The result of the glasshouse pot trial suggests that some isolates of these species may have potential as biological control agents for plant disease.
authors.affiliation: CSIRO Land and Water, Glen Osmond, South Australia, 5064, Australia.
authors.forename: I L
authors.initials: IL
authors.lastname: Ross
authors.forename: Y
authors.initials: Y
authors.lastname: Alami
authors.forename: P R
authors.initials: PR
authors.lastname: Harvey
authors.forename: W
authors.initials: W
authors.lastname: Achouak
authors.forename: M H
authors.initials: MH
authors.lastname: Ryder
mesh_terms: D015373:Bacterial Typing Techniques; D004275:DNA, Ribosomal / Q000032:analysis; D014644:Genetic Variation; D010572:Pest Control, Biological; D020081:Phyllachorales / Q000254:growth & development*; D011549:Pseudomonas / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification / Q000502:physiology; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D015183:Restriction Mapping; D012988:Soil Microbiology; D013021:South Australia; D014908:Triticum / Q000382:microbiology*
chemical_list: D004275:DNA, Ribosomal; D012336:RNA, Ribosomal, 16S