Shufflet: shuffling sequences while conserving the k-let counts.
Shufflet is a program and a web-application that generates fast random shufflings of sequences (DNA, protein or others), conserving the exact k-let counts for a given k. The sequences are sampled uniformly from all the valid permutations.
Coward
E
E
Laboratoire Génome et Informatique, Université de Versailles Saint-Quentin-en-Yvelines, France. coward@genetique.uvsq.fr
D000465:Algorithms; D016208:Databases, Factual; D016247:Information Storage and Retrieval / Q000379:methods*; D020407:Internet; D015233:Models, Statistical; D009010:Monte Carlo Method; D011381:Programming Languages; D017422:Sequence Analysis, DNA / Q000379:methods*; D013269:Stochastic Processes