title: Mass spectrometry of single-stranded restriction fragments captured by an undigested complementary sequence.
abstract: In this report, we describe a simple and accurate method to analyze restriction fragments using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. The two complementary strands of restriction fragments are separated through hybridization to a capture probe, which is a single-stranded undigested fragment. Using the biotin-streptavidin linkage, the hybrid is immobilized on streptavidin-coated magnetic beads. After conditioning the captured restriction fragments, they are eluted from the probe and their molecular weights are determined. The proposed method greatly improves the quality, and reduces the complexity of the mass spectrum by analyzing only one of the complementary strands of restriction fragments.
authors.affiliation: Sequenom Inc., 11555 Sorrento Valley Road, San Diego, CA 92121, USA. nchiu@sequenom.com
authors.forename: N H
authors.initials: NH
authors.lastname: Chiu
authors.forename: K
authors.initials: K
authors.lastname: Tang
authors.forename: P
authors.initials: P
authors.lastname: Yip
authors.forename: A
authors.initials: A
authors.lastname: Braun
authors.forename: H
authors.initials: H
authors.lastname: Koster
authors.forename: C R
authors.initials: CR
authors.lastname: Cantor
mesh_terms: D019921:Biotinylation; D004247:DNA / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D015342:DNA Probes; D015252:Deoxyribonucleases, Type II Site-Specific / Q000378:metabolism; D005914:Globins / Q000235:genetics; D006801:Humans; D008280:Magnetics; D009693:Nucleic Acid Hybridization; D016133:Polymerase Chain Reaction; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / Q000379:methods*
chemical_list: D015342:DNA Probes; D005914:Globins; D004247:DNA; C027908:endodeoxyribonuclease DdeI; D015252:Deoxyribonucleases, Type II Site-Specific; C032229:GANTC-specific type II deoxyribonucleases