title: Absorption of antisense oligonucleotides in rat intestine: effect of chemistry and length.
abstract: An in situ single-pass perfusion model was used to assess the effect of chemical modification and length on permeability and absorption of various oligonucleotides in rat intestine. Phosphorothioate oligodeoxynucleotides (PS-ODN) were compared with oligoribonucleotides with 2'-methoxyethyl (MOE) or 2'-O-methyl (OMe) modifications. A 25-mer PS-OMe-modified oligonucleotide showed relatively poor permeability in this model, as did unmodified 20-mer PS-ODN (permeability coefficient [P(eff)] = 2-8 X 10(-6)cm/sec). Modifying some or all of the oligonucleotides with 2'-MOE groups on deoxyribose and 5'-methylation of the cytosines substantially increased intestinal permeability of oligonucleotides. Both partially and fully modified PS-MOE oligonucleotides showed a (2-4)-fold increase in permeability as compared with unmodified PS-ODN. The presence of a phosphodiester backbone in MOE-modified compounds led to further increases in intestinal permeability. PS-MOE composed of 6, 8, 10, 12, 14, 16, 18, 20, and 22 nucleotides were also examined. It was found that the permeability of these oligonucleotides increased linearly with decreasing length.
authors.affiliation: Department of Toxicology and Pharmacokinetics, ISIS Pharmaceuticals, Inc., Carlsbad, CA 92008, USA.
authors.forename: O
authors.initials: O
authors.lastname: Khatsenko
authors.forename: R
authors.initials: R
authors.lastname: Morgan
authors.forename: L
authors.initials: L
authors.lastname: Truong
authors.forename: C
authors.initials: C
authors.lastname: York-Defalco
authors.forename: H
authors.initials: H
authors.lastname: Sasmor
authors.forename: B
authors.initials: B
authors.lastname: Conklin
authors.forename: R S
authors.initials: RS
authors.lastname: Geary
mesh_terms: D000818:Animals; D001692:Biological Transport; D007150:Immunohistochemistry; D007408:Intestinal Absorption; D007413:Intestinal Mucosa / Q000378:metabolism*; D008297:Male; D016376:Oligonucleotides, Antisense / Q000097:blood / Q000737:chemistry / Q000378:metabolism*; D010477:Perfusion; D010539:Permeability; D051381:Rats; D017207:Rats, Sprague-Dawley; D013329:Structure-Activity Relationship
chemical_list: D016376:Oligonucleotides, Antisense