title: Evaluation of the LiPA MYCOBACTERIA assay for identification of mycobacterial species from BACTEC 12B bottles.
abstract: The LiPA MYCOBACTERIA (Innogenetics NV, Ghent, Belgium) assay was used to identify mycobacterial isolates using culture fluid from positive BACTEC 12B bottles. The LiPA method involves reverse hybridization of a biotinylated mycobacterial PCR fragment, a 16 to 23S rRNA spacer region, to oligonucleotide probes arranged in lines on a membrane strip, with detection via biotin-streptavidin coupling by a colorimetric system. This system identifies Mycobacterium species and differentiates M. tuberculosis complex, M. avium-M. intracellulare complex, and the following mycobacterial species: M. avium, M. intracellulare, M. kansasii, M. chelonae group, M. gordonae, M. xenopi, and M. scrofulaceum. The mycobacteria were identified in the laboratory by a series of tests, including the Roche AMPLICOR Mycobacterium tuberculosis (MTB) test, the Gen-Probe ACCUPROBE, and a PCR-restriction fragment length polymorphism (PCR-RFLP) analysis of the 65-kDa heat shock protein gene. The LiPA MYCOBACTERIA assay detected 60 mycobacterium isolates from 59 patients. There was complete agreement between LiPA and the laboratory identification tests for 26 M. tuberculosis complex, 9 M. avium, 3 M. intracellulare complex, 3 M. kansasii, 4 M. gordonae, and 5 M. chelonae group (all were M. abscessus) isolates. Three patient samples were LiPA positive for M. avium-M. intracellulare complex, and all were identified as M. intracellulare by the PCR-RFLP analysis. Seven additional mycobacterial species were LiPA positive for Mycobacterium spp. (six were M. fortuitum, and one was M. szulgai). The LiPA MYCOBACTERIA assay was easy to perform, and the interpretation of the positive bands was clear-cut. Following PCR amplification and gel electrophoresis, the LiPA assay was completed within 3 h.
authors.affiliation: Department of Pathology, Jackson Memorial Medical Center, University of Miami, Miami, Florida, USA. nmiller@med.miami.edu
authors.forename: N
authors.initials: N
authors.lastname: Miller
authors.forename: S
authors.initials: S
authors.lastname: Infante
authors.forename: T
authors.initials: T
authors.lastname: Cleary
mesh_terms: D015373:Bacterial Typing Techniques / Q000295:instrumentation; D004275:DNA, Ribosomal / Q000235:genetics; D006801:Humans; D009161:Mycobacterium / Q000145:classification* / Q000302:isolation & purification; D009164:Mycobacterium Infections / Q000145:classification / Q000175:diagnosis*; D009162:Mycobacterium avium / Q000145:classification / Q000302:isolation & purification; D015269:Mycobacterium avium Complex / Q000145:classification / Q000302:isolation & purification; D016926:Mycobacterium chelonae / Q000145:classification / Q000302:isolation & purification; D019909:Mycobacterium kansasii; D015359:Mycobacterium scrofulaceum / Q000145:classification / Q000302:isolation & purification; D009169:Mycobacterium tuberculosis / Q000145:classification / Q000302:isolation & purification; D009170:Nontuberculous Mycobacteria / Q000145:classification / Q000302:isolation & purification; D016133:Polymerase Chain Reaction / Q000379:methods*; D012150:Polymorphism, Restriction Fragment Length; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012338:RNA, Ribosomal, 23S / Q000235:genetics
chemical_list: D004275:DNA, Ribosomal; D012336:RNA, Ribosomal, 16S; D012338:RNA, Ribosomal, 23S