title: pK(a) calculations for class C beta-lactamases: the role of Tyr-150.
abstract: The Poisson-Boltzmann method was used to compute the pK(a) values of titratable residues in a set of class C beta-lactamases. In these calculations, the pK(a) of the phenolic group of residue Tyr150 is the only one to stand out with an abnormally low value of 8.3, more than one pK(a) unit lower than the measured reference value for tyrosine in solution. Other important residues of the catalytic pocket, such as the conserved Lys67, Lys315, His314, and Glu272 (hydrogen-bonded to the ammonium group of Lys315), display normal protonation states at neutral pH. pK(a) values were also computed in catalytically impaired beta-lactamase mutants. Comparisons between the relative k(cat) values and the Tyr150 pK(a) value in these mutants revealed a striking correlation. In active enzymes, this pK(a) value is always lower than the solution reference value while it is close to normal in inactive enzymes. These results thus support the hypothesis that the phenolate form of Tyr150 is responsible for the activation of the nucleophilic serine. The possible roles of Lys67 and Lys315 during catalysis are also discussed.
authors.affiliation: Centre d'Ingénierie des Protéines, University of Liège, Sart-Tilman, Belgium. jlamotte@ulg.ac.be
authors.forename: J
authors.initials: J
authors.lastname: Lamotte-Brasseur
authors.forename: A
authors.initials: A
authors.lastname: Dubus
authors.forename: R C
authors.initials: RC
authors.lastname: Wade
mesh_terms: D020134:Catalytic Domain; D016971:Citrobacter freundii / Q000737:chemistry / Q000235:genetics; D016972:Enterobacter cloacae / Q000737:chemistry / Q000235:genetics; D004926:Escherichia coli / Q000737:chemistry / Q000235:genetics; D020563:Gammaproteobacteria / Q000737:chemistry* / Q000235:genetics; D006860:Hydrogen Bonding; D006863:Hydrogen-Ion Concentration; D008958:Models, Molecular; D009154:Mutation; D055672:Static Electricity; D014443:Tyrosine / Q000737:chemistry*; D001618:beta-Lactamases / Q000737:chemistry*
chemical_list: D014443:Tyrosine; D001618:beta-Lactamases