title: Computational analysis of the first biheterocyclization site of the antibiotic microcin B17.
abstract: Microcin B 17 (MccB17) undergoes an enzyme catalyzed posttranslational modification to form four oxazole and four thiazole rings. Four of these rings form 4,2 - connected biheterocyclic functionalities. In this study, the hexapeptide sequence surrounding the first biheterocyclization site of microcin B17 was examined using computational calculations and database analysis to see if it was preorganized for cyclization in a manner similar to that found in the autocatalytic posttranslational cyclization of Green Fluorescent Protein (GFP). Attention was focused on the intermolecular distances between the sulfur and oxygen atoms of the cysteine and serine residues and the carbonyl carbons which they attack in the ring formation. Conformational searches located some low energy conformations that contained relatively short oxygen to carbonyl carbon distances, which indicated that the oxazole forming fragment in microcin B17 is preorganized for cyclization. However, the lack of any clear patterns for the sulfur to carbon distances show that the side-chain of cysteine does not adopt any low energy conformations that are geometrically preorganized for cyclization. The MccB17 synthetase enzyme complex which catalyzes the cyclization process therefore has both steric and electronic functions. The data obtained in this investigation is in agreement with empirical data which shows that biheterocyclization will only occur if the thiazole forms before the oxazole.
authors.affiliation: Department of Chemistry, Connecticut College, New London 06320, USA.
authors.forename: M A
authors.initials: MA
authors.lastname: Donnelly
authors.forename: M
authors.initials: M
authors.lastname: Zimmer
mesh_terms: D000900:Anti-Bacterial Agents / Q000737:chemistry*; D001430:Bacteriocins / Q000737:chemistry*; D003198:Computer Simulation; D003500:Cyclization; D049452:Green Fluorescent Proteins; D008164:Luminescent Proteins / Q000737:chemistry; D009010:Monte Carlo Method; D010080:Oxazoles / Q000378:metabolism; D011487:Protein Conformation; D011499:Protein Processing, Post-Translational; D013844:Thiazoles / Q000378:metabolism
chemical_list: D000900:Anti-Bacterial Agents; D001430:Bacteriocins; D008164:Luminescent Proteins; D010080:Oxazoles; D013844:Thiazoles; C020411:microcin; D049452:Green Fluorescent Proteins