title: Electrostatics of mesophilic and psychrophilic trypsin isoenzymes: qualitative evaluation of electrostatic differences at the substrate binding site.
abstract: A qualitative evaluation of electrostatic features of the substrate binding region of seven isoenzymes of trypsin has been performed by using the continuum electrostatic model for the solution of the Poisson-Boltzmann equation. The sources of the electrostatic differences among the trypsins have been sought by comparative calculations on selective charges: all charges, conserved charges, partial charges, unique cold trypsin charges, and a number of charge mutations. As expected, most of the negative potential at the S(1) region of all trypsins is generated from Asp(189), but the potential varies significantly among the seven trypsin isoenzymes. The three cold active enzymes included in this study possess a notably lower potential at and around the S(1)-pocket compared with the warm active counterparts; this finding may be the main contribution to the increased binding affinity. The source of the differences are nonconserved charged residues outside the specificity pocket, producing electric fields at the S(1)-pocket that are different in both sign and magnitude. The surface charges of the mesophilic trypsins generally induce the S(1) pocket positively, whereas surface charges of the cold trypsins produce a negative electric field of this region. Calculations on mutants, where charged amino acids were substituted between the trypsins, showed that mutations in Loop2 (residues 221B and 224) and residue 175, in particular, were responsible for the low potential of the cold enzymes.
authors.affiliation: Department of Chemistry, University of Tromsø, Norway.
authors.forename: A A
authors.initials: AA
authors.lastname: Gorfe
authors.forename: B O
authors.initials: BO
authors.lastname: Brandsdal
authors.forename: H K
authors.initials: HK
authors.lastname: Leiros
authors.forename: R
authors.initials: R
authors.lastname: Helland
authors.forename: A O
authors.initials: AO
authors.lastname: Smalås
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001665:Binding Sites; D002417:Cattle; D003198:Computer Simulation; D005399:Fishes; D006863:Hydrogen-Ion Concentration; D007527:Isoenzymes; D008958:Models, Molecular; D008969:Molecular Sequence Data; D016297:Mutagenesis, Site-Directed; D011485:Protein Binding; D051381:Rats; D012474:Salmon; D017386:Sequence Homology, Amino Acid; D055672:Static Electricity; D013552:Swine; D014357:Trypsin / Q000737:chemistry*
chemical_list: D007527:Isoenzymes; D014357:Trypsin