title: DNA sequence motifs which direct adeno-associated virus site-specific integration in a model system.
abstract: The DNA sequence motifs which direct adeno-associated virus type 2 site-specific integration are being investigated using a shuttle vector, propagated as a stable episome in cultured cell lines, as the target for integration. Previously, we reported that the minimum episomal targeting elements comprise a 16-bp binding motif (Rep binding site [RBS]) for a viral regulatory protein (Rep) separated by a short DNA spacer from a sequence (terminal resolution site [TRS]) that can serve as a substrate for Rep-mediated nicking activity (R. M. Linden, P. Ward, C. Giraud, E. Winocour, and K. I. Berns, Proc. Natl. Acad. Sci. USA 93:11288-11294, 1996; R. M. Linden, E. Winocour, and K. I. Berns, Proc. Natl. Acad. Sci. USA 93:7966-7972, 1996). We now report that episomal integration depends upon both the sequence and the position of the spacer DNA separating the RBS and TRS motifs. The spacer thus constitutes a third element required for site-specific episomal integration.
authors.affiliation: Department of Pathology, Harvard Medical School, Boston, MA 02215, USA.
authors.forename: P
authors.initials: P
authors.lastname: Meneses
authors.forename: K I
authors.initials: KI
authors.lastname: Berns
authors.forename: E
authors.initials: E
authors.lastname: Winocour
mesh_terms: D001665:Binding Sites; D002461:Cell Line, Transformed; D004265:DNA Helicases / Q000378:metabolism; D004279:DNA, Viral / Q000378:metabolism; D004268:DNA-Binding Proteins / Q000378:metabolism; D000229:Dependovirus / Q000235:genetics*; D006801:Humans; D008954:Models, Biological; D016297:Mutagenesis, Site-Directed; D014764:Viral Proteins / Q000378:metabolism; D016662:Virus Integration
chemical_list: D004279:DNA, Viral; D004268:DNA-Binding Proteins; D014764:Viral Proteins; C068734:rep proteins, Adeno-associated virus 2; D004265:DNA Helicases