Interaction of alkaline-earth metal ions with calf thymus DNA. Volume and compressibility effects in diluted aqueous solutions.
The binding of Mg2+, Ca2+, Sr2+ and Ba2+ ions to calf thymus DNA in solutions has been investigated by ultrasonic and densimetric techniques. The obtained parameters, the apparent molar volume, phiV, and the apparent molar adiabatic compressibility, phiK(S), are very sensitive to hydration of investigated molecules. The interaction between the cations and DNA is accompanied by overlapping their hydration shells and consequently releasing the water molecules from hydration shells to bulk state. The change in the hydration is reflected in the measured parameters, phiV and phiK(S). The magnitude of these hydration changes is determined by the position of the cation relative to DNA atomic groups involved in the binding, and thus can characterize the structure of cation-DNA complexes. The values of the dehydration effects of the binding, deltaphiV and deltaphiK(S), correspond to two direct or higher number of indirect contacts between calf thymus DNA and the cations.
Kankia
B I
BI
Department of Pharmaceutical Sciences, University of Nebraska Medical Center, Omaha 68198-6025, USA. bkankia@unmc.edu
D000818:Animals; D002413:Cations, Divalent / Q000737:chemistry / Q000378:metabolism; D002417:Cattle; D002942:Circular Dichroism; D004247:DNA / Q000737:chemistry* / Q000378:metabolism*; D003720:Densitometry; D008673:Metals, Alkaline Earth / Q000737:chemistry / Q000378:metabolism*; D012996:Solutions; D013950:Thymus Gland; D017186:Titrimetry; D014465:Ultrasonics; D014867:Water / Q000737:chemistry / Q000378:metabolism*
D002413:Cations, Divalent; D008673:Metals, Alkaline Earth; D012996:Solutions; D014867:Water; D004247:DNA