title: Evolution of a degradative bacterial consortium during the enrichment of naphtha solvent.
abstract: A microbial mixed culture able to degrade naphtha solvent, a model of hydrocarbon aromatic mixture, was isolated from a hydrocarbon-polluted soil. Composition of the population was monitored by phenotypic and molecular methods applied on soil DNA, on whole enrichment culture DNA, and on 85 isolated strains. Strains were characterized for their 16S rDNA restriction profiles and for their random amplified polymorphic DNA profiles. Catabolic capabilities were monitored by phenotypic traits and by PCR assays for the presence of the catabolic genes methyl mono-oxygenase ( xylA, M), catechol 2,3 dioxygenase (xylE) and toluene dioxygenase (todC1) of TOL and TOD pathways. Different haplotypes belonging to Pseudomonas putida, Ps. aureofaciens and Ps. aeruginosa were found to degrade aromatic compounds and naphtha solvent. The intrinsic catabolic activity of the microbial population of the polluted site was detected by PCR amplification of the xylE gene directly from soil DNA.
authors.affiliation: Dipartimento di Scienze e Tecnologie Alimentari e Microbiologiche (DISTAM), Università degli Studi di Milano, Milan, Italy. lucia.cavalca@unimi.it
authors.forename: L
authors.initials: L
authors.lastname: Cavalca
authors.forename: A
authors.initials: A
authors.lastname: Confalonieri
authors.forename: S
authors.initials: S
authors.lastname: Larcher
authors.forename: V
authors.initials: V
authors.lastname: Andreoni
mesh_terms: D001419:Bacteria / Q000235:genetics* / Q000302:isolation & purification / Q000378:metabolism; D001673:Biodegradation, Environmental; D050557:Catechol 2,3-Dioxygenase; D002851:Chromatography, High Pressure Liquid; D016000:Cluster Analysis; D017931:DNA Primers; D004269:DNA, Bacterial / Q000032:analysis; D004275:DNA, Ribosomal / Q000032:analysis; D049308:Dioxygenases; D043364:Endo-1,4-beta Xylanases; D006239:Haplotypes; D006838:Hydrocarbons / Q000302:isolation & purification*; D010105:Oxygenases / Q000235:genetics; D010641:Phenotype; D012150:Polymorphism, Restriction Fragment Length; D011549:Pseudomonas / Q000235:genetics / Q000378:metabolism; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D019105:Random Amplified Polymorphic DNA Technique; D012988:Soil Microbiology; D012989:Soil Pollutants / Q000302:isolation & purification*; D014995:Xylosidases / Q000235:genetics
chemical_list: D017931:DNA Primers; D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D006838:Hydrocarbons; D012336:RNA, Ribosomal, 16S; D012989:Soil Pollutants; C060929:aromatic naphtha, type I; D010105:Oxygenases; D049308:Dioxygenases; D050557:Catechol 2,3-Dioxygenase; C023172:toluene dioxygenase; D014995:Xylosidases; D043364:Endo-1,4-beta Xylanases