title: Fast, isotope-free methods for the assay of thiamine-binding proteins and for the determination of their affinities to thiamine-related compounds.
abstract: A fast, isotope-free method for the determination of parameters for the interactions of proteins with thiamine and related compounds was developed. The free and bound forms of a ligand (thiamine or a fluorogenic analogue) were separated by ultrafiltration using commercially available centrifugal protein microconcentrators (Nanosep, Pall Filtron). The free thiamine concentration in the filtrate was analysed by (i) a pre-column derivatisation of thiamine to thiochrome with the use of alkaline potassium hexacyanoferrate(III) followed by reverse-phase HPLC (isocratic, analytical ODS column, 10 mM potassium phosphate, pH 7.8, 5% tetrahydrofuran) with fluorometric detection (excitation at 365 nm, emission at 430 nm), or (ii) an ion-pair reverse-phase HPLC (isocratic, ODS column, 0.08% trifluoroacetic acid-0.08% sodium octanesulfonate-25% tetrahydrofuran) with post-column derivatisation and fluorometric detection. The 'saturation-binding' version (single ligand added in increasing doses to the protein samples) of this method allowed the determination of low micromolar concentrations of thiamine-binding proteins and of the dissociation constants of their complexes with thiamine or fluorogenic thiamine analogues in the range of 0.3-10 microM. Using the other, 'competitive displacement' version (constant amount of thiamine plus increasing doses of a competing ligand), dissociation constants at least one order of magnitude higher could successfully be determined.
authors.affiliation: Department of Biochemistry, The Jan Zurzycki Institute of Molecular Biology, Jagiellonian University, Al. Mickiewicza 3, 31-120, Kraków, Poland.
authors.forename: B
authors.initials: B
authors.lastname: Mickowska
authors.forename: R
authors.initials: R
authors.lastname: Dulinski
authors.forename: A
authors.initials: A
authors.lastname: Kozik
mesh_terms: D001671:Biochemistry / Q000379:methods*; D002851:Chromatography, High Pressure Liquid / Q000379:methods*; D019612:Fagopyrum / Q000378:metabolism; D005470:Fluorometry / Q000379:methods; D007700:Kinetics; D008024:Ligands; D010940:Plant Proteins / Q000032:analysis / Q000378:metabolism; D015203:Reproducibility of Results; D012441:Saccharomyces cerevisiae / Q000737:chemistry; D013831:Thiamine / Q000031:analogs & derivatives / Q000032:analysis* / Q000378:metabolism*; D014197:Trees / Q000378:metabolism; D014462:Ultrafiltration / Q000379:methods
chemical_list: D008024:Ligands; D010940:Plant Proteins; D013831:Thiamine