Molecular characterization at the RNA and gene levels of U3 snoRNA from a unicellular green alga, Chlamydomonas reinhardtii.
A U3 snoRNA gene isolated from a Chlamydomonas reinhardtii (CRE:) genomic library contains putative pol III-specific transcription signals similar to those of RNA polymerase III-specific small nuclear (sn)RNA genes of higher plants. The 222 nt long CRE: U3 snoRNA was immunoprecipitated by anti-gamma-mpppN antisera, but not by anti-m(2,2,7)G antibodies, supporting the notion that it is a RNA polymerase III transcript. Tagged CRE: U3 snoRNA gene constructs were expressed in CRE: cells. Results of chemical and enzymatic structure probing of CRE: U3 snoRNA in solution and of DMS modification of CRE: U3 snoRNA under in vivo conditions revealed that the two-hairpin structure of the 5'-domain that is found in solution is no longer detected under in vivo conditions. The observed differences can be explained by the formation of several base pair interactions with the 18S and 5'-ETS parts of the pre-rRNA. A model that involves five intermolecular helices is proposed.
Antal
M
M
Institute of Plant Biology, Biological Research Center, Hungarian Academy of Sciences, H-6701 Szeged, PO Box 521, Hungary.
Mougin
A
A
Kis
M
M
Boros
E
E
Steger
G
G
Jakab
G
G
Solymosy
F
F
Branlant
C
C
D000818:Animals; D020029:Base Pairing; D001483:Base Sequence; D016825:Chlamydomonas reinhardtii / Q000235:genetics*; D015870:Gene Expression; D007163:Immunosorbent Techniques; D008958:Models, Molecular; D008969:Molecular Sequence Data; D016296:Mutagenesis; D009690:Nucleic Acid Conformation; D016133:Polymerase Chain Reaction; D012320:RNA Polymerase III / Q000378:metabolism; D016053:RNA, Protozoan / Q000737:chemistry* / Q000302:isolation & purification; D020537:RNA, Small Nucleolar / Q000032:analysis / Q000737:chemistry* / Q000235:genetics; D016415:Sequence Alignment; D012996:Solutions; D014158:Transcription, Genetic
D016053:RNA, Protozoan; D020537:RNA, Small Nucleolar; C117378:RNA, U3 small nucleolar; D012996:Solutions; D012320:RNA Polymerase III