title: Evaluation of biotin-dye conjugates for use in an HPLC assay to assess relative binding of biotin derivatives with avidin and streptavidin.
abstract: In this investigation, studies were conducted to determine if size exclusion HPLC could be used to assess relative association rates (on-rates) and dissociation rates (off-rates) of biotin derivatives from avidin (Av) and streptavidin (SAv). For easy detection and quantification of biotin derivatives, molecules that can be detected by UV absorbance were conjugated to biotin. Concern that conjugation of the chromophoric moieties (dyes) might affect biotin binding with Av and SAv or might interact with the HPLC column led to evaluation of 10 biotin-dye conjugates. The dyes conjugated with biotin included dansyl, cyanocobalamin (CN-Cbl), coumarin 343, Lissamine-rhodamine, fluorescein, Cascade Blue, Lucifer Yellow, Oregon Green, tetramethylrhodamine, and Alexa Fluor 594. The biotin-dye conjugates were initially evaluated to determine their peak characteristics on two different size exclusion HPLC columns. Measurement of the percent of biotin-dye conjugate bound with Av in the presence of an equal quantity of biotin provided an association rate relative to biotin. All of the biotin-dyes tested had association rates within a factor of 3x (slower) that of biotin. The relative dissociation rate of biotin-dye conjugates was assessed by challenging the biotin conjugate bound to Av or SAv with a large excess of biotin. All of the initial biotin-dye conjugates tested bound Av and SAv tightly resulting in very slow dissociation rates. From the biotin-dye conjugates studied, biotin-CN-Cbl, 6b, was selected as the best conjugate for the HPLC assay. To test the HPLC assay, an iminobiotin-CN-Cbl conjugate, 13a, and a biotin-sarcosine-CN-Cbl conjugate, 13b, were synthesized. The fact that the iminobiotin does not bind with Av at physiological pH was easily detected in the size exclusion HPLC assay. The biotin-sarcosine-CN-Cbl conjugate was expected to have a more rapid dissociation rate than the other biotin-dye conjugates. This was confirmed in that HPLC assay. Although 13b bound tightly with Av in the absence of added biotin, it was completely released within 1 h when challenged by an excess of biotin. A slower dissociation of 13b was noted with SAv. The results obtained indicate that CN-Cbl conjugates of biotin derivatives can be used to determine relative on-rates and off-rates of biotin derivatives with Av and SAv. The studies also demonstrated that the biotin-CN-Cbl conjugate, 6b, can be used as a reference compound to compare on-rates and off-rates of nonchromophoric biotin derivatives.
authors.affiliation: Department of Radiation Oncology, University of Washington, Seattle, Washington 98195, and Molecular Probes, Inc., Eugene, Oregon 97402, USA. dswilbur@u.washington.edu
authors.forename: D S
authors.initials: DS
authors.lastname: Wilbur
authors.forename: P M
authors.initials: PM
authors.lastname: Pathare
authors.forename: D K
authors.initials: DK
authors.lastname: Hamlin
authors.forename: M B
authors.initials: MB
authors.lastname: Frownfelter
authors.forename: B B
authors.initials: BB
authors.lastname: Kegley
authors.forename: W Y
authors.initials: WY
authors.lastname: Leung
authors.forename: K R
authors.initials: KR
authors.lastname: Gee
mesh_terms: D001360:Avidin / Q000378:metabolism*; D001710:Biotin / Q000737:chemistry* / Q000378:metabolism; D002851:Chromatography, High Pressure Liquid; D004396:Coloring Agents / Q000737:chemistry*; D005069:Evaluation Studies as Topic; D011485:Protein Binding; D019809:Streptavidin / Q000378:metabolism*
chemical_list: D004396:Coloring Agents; D001360:Avidin; D001710:Biotin; D019809:Streptavidin