Computational studies on carbohydrates: solvation studies on maltose and cyclomaltooligosaccharides (cyclodextrins) using a DFT/ab initio-derived empirical force field, AMB99C.
An empirical force field, denoted AMB99C, has been used to study molecular properties of alpha-(1-->4)-linked carbohydrates in solution. AMB99C was parameterized using structural and energetic parameters from density functional ab initio methodology. In this work we examine the solution behavior of the beta anomer of maltose and cyclohexa-, cyclohepta-, and cyclooctaamyloses (alpha-, beta-, and gamma-cyclodextrins or alpha-, beta-, and gamma-CDs, respectively), as well as of two larger (DP 10, epsilon-CD; DP 21) cyclomaltooligosaccharides, CA10 and CA21. Experimental data used for comparison purposes include X-ray structures, small-angle scattering radius of gyration values, NMR nuclear Overhauser enhancements (NOEs), and proton coupling constants. Molecular dynamics simulations were carried out using explicit water molecules (TIP3P) to establish equilibrium populations of conformations in solution, and these results are compared with other calculated values and a variety of experimental parameters, such as average H-1-H-4' distances between the rings in beta-maltose, and the primary hydroxyl groups' conformational populations. Medium-to-large cyclomaltooligosaccharide molecules were studied to test for glucose ring puckering and stability of kinked and 'flipped' conformations. The results of the solvation studies are in excellent agreement with experimental structural parameters.
Momany
F A
FA
Plant Polymer Research, USDA, ARS, National Center for Agricultural Utilization Research, Peoria, IL 61604, USA. momanyfa@mail.ncaur.usda.gov
Willett
J L
JL
D002236:Carbohydrate Conformation / Q000187:drug effects; D002241:Carbohydrates / Q000737:chemistry*; D003198:Computer Simulation; D003505:Cyclodextrins / Q000737:chemistry; D008320:Maltose / Q000737:chemistry; D008958:Models, Molecular; D009844:Oligosaccharides / Q000737:chemistry; D012997:Solvents / Q000494:pharmacology; D013816:Thermodynamics; D013997:Time Factors; D014867:Water / Q000494:pharmacology
D002241:Carbohydrates; D003505:Cyclodextrins; D009844:Oligosaccharides; D012997:Solvents; D014867:Water; D008320:Maltose