title: Characterization of a Tn5 pre-cleavage synaptic complex.
abstract: Protein catalyzed DNA rearrangements typically require assembly of complex nucleoprotein structures. In transposition and integration reactions, these structures, termed synaptic complexes, are mandatory for catalysis. We characterize the Tn5 pre-cleavage synaptic complex, the simplest transposition complex described to date. We identified this complex by gel retardation assay using short, linear fragments and have shown that it contains a dimer of transposase, two DNA molecules, and is competent for DNA cleavage in the presence of Mg(2+). We also used hydroxyl radical footprinting and interference techniques to delineate the protein-DNA contacts made in the Tn5 synaptic and monomer complexes. All positions (except position 1) of the end sequence are contacted by transposase in the synaptic complex. We have determined that positions 2-5 of the end sequence are specifically required for synaptic complex formation as they are not required for monomer complex formation. In addition, in the synaptic complex, there is a strong, local distortion centered around position 1 which likely facilitates cleavage.
authors.affiliation: Department of Biochemistry, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706, USA.
authors.forename: A
authors.initials: A
authors.lastname: Bhasin
authors.forename: I Y
authors.initials: IY
authors.lastname: Goryshin
authors.forename: M
authors.initials: M
authors.lastname: Steiniger-White
authors.forename: D
authors.initials: D
authors.lastname: York
authors.forename: W S
authors.initials: WS
authors.lastname: Reznikoff
mesh_terms: D001419:Bacteria / Q000201:enzymology* / Q000235:genetics; D001483:Base Sequence; D001665:Binding Sites; D004247:DNA / Q000235:genetics / Q000378:metabolism*; D018983:DNA Footprinting; D004251:DNA Transposable Elements / Q000235:genetics; D004268:DNA-Binding Proteins / Q000235:genetics / Q000378:metabolism; D019281:Dimerization; D017665:Hydroxyl Radical; D008274:Magnesium / Q000378:metabolism; D009154:Mutation; D011485:Protein Binding; D011995:Recombination, Genetic / Q000235:genetics*; D019895:Transposases / Q000235:genetics / Q000378:metabolism*
chemical_list: D004251:DNA Transposable Elements; D004268:DNA-Binding Proteins; D017665:Hydroxyl Radical; D004247:DNA; D019895:Transposases; D008274:Magnesium