title: Phylogenetic and taxonomic heterogeneity of Cryptococcus humicolus by analysis of the sequences of the internal transcribed spacer regions and 18S rDNA, and the phylogenetic relationships of C. humicolus, C. curvatus, and the genus Trichosporon.
abstract: The phylogenetic and taxonomic heterogeneity of a rare opportunistic yeast pathogen, Cryptococcus humicolus, was revealed by analysis of the sequence of the internal transcribed spacer (ITS) region. Sixteen strains of C. humicolus showed a wide diversity in their ITS sequences. In addition, their 18S rDNA sequences were determined and used to analyze the phylogenetic relationships among C. humicolus and related yeasts. On trees constructed by the Neighbor-Joining and Maximum Parsimony methods, C. humicolus strains were phylogenetically closely related to each other with the exception of one strain, and they clustered with C. curvatus and Trichosporon species with high bootstrap values. Three C. humicolus strains obtained from humans belonged to the group of Trichosporon serotype I species. The results suggest that C. humicolus is a genetically heterogeneous species which should be reclassified on the basis of DNA sequence data.
authors.affiliation: Department of Microbiology, Meiji Pharmaceutical University, Kiyose, Tokyo, Japan. sugita@my-pharm.ac.jp
authors.forename: T
authors.initials: T
authors.lastname: Sugita
authors.forename: M
authors.initials: M
authors.lastname: Takashima
authors.forename: R
authors.initials: R
authors.lastname: Ikeda
authors.forename: T
authors.initials: T
authors.lastname: Nakase
authors.forename: T
authors.initials: T
authors.lastname: Shinoda
mesh_terms: D001483:Base Sequence; D002965:Classification; D003454:Cryptococcus / Q000145:classification / Q000235:genetics*; D004271:DNA, Fungal / Q000145:classification*; D004275:DNA, Ribosomal / Q000145:classification*; D021903:DNA, Ribosomal Spacer / Q000145:classification*; D018740:Genetic Heterogeneity; D006801:Humans; D008969:Molecular Sequence Data; D010802:Phylogeny; D012337:RNA, Ribosomal, 18S; D012703:Serotyping; D014250:Trichosporon / Q000145:classification / Q000235:genetics
chemical_list: D004271:DNA, Fungal; D004275:DNA, Ribosomal; D021903:DNA, Ribosomal Spacer; D012337:RNA, Ribosomal, 18S