Topological properties of the peptide bond in glycyl-L-threonine dihydrate based on a fast synchrotron/CCD-diffraction experiment at 100 K.
The charge density of glycyl-L-threonine dihydrate is extracted from a synchrotron data set of 98405 reflections collected at 100 K with a Bruker CCD area detector up to a resolution of d=0.38 A (sintheta/lambda = 1.32 A 1). The data are interpreted in terms of the "rigid pseudoatom" model. The topology of the experimental density is analyzed and compared with the topology obtained experimentally for the constituting amino acids and to that derived from Hartree-Fock calculations for the isolated molecule. All critical points of the electron density at the covalent and hydrogen bonds, as well as those of the Laplacian, were located, thereby deriving quantitative topological data for the peptide and side chain bonds. Bond topological indices in the dipeptide compare well with those of the corresponding bonds in the building amino acids, thus suggesting transferability of electronic properties of atoms and functional groups when these are derived by Bader's partitioning. Discrepancies between theoretical and experimental results could be attributed to crystal field effects.
Dittrich
B
B
Institut für Kristallographie, Freie Universitüt Berlin, Germany.
Flaig
R
R
Koritsánszky
T
T
Krane
H G
HG
Morgenroth
W
W
Luger
P
P
D004151:Dipeptides / Q000737:chemistry* / Q000378:metabolism*; D005998:Glycine / Q000737:chemistry* / Q000378:metabolism; D006860:Hydrogen Bonding; D008958:Models, Molecular; D008968:Molecular Conformation; D055672:Static Electricity; D017356:Synchrotrons; D013696:Temperature; D013912:Threonine / Q000737:chemistry* / Q000378:metabolism; D014867:Water / Q000378:metabolism; D014961:X-Ray Diffraction
D004151:Dipeptides; D014867:Water; D013912:Threonine; D005998:Glycine