title: A novel venombin B from agkistrodon contortrix contortrix: evidence for recognition properties in the surface around the primary specificity pocket different from thrombin.
abstract: A novel thrombin-like enzyme (named contortrixobin) has been purified to homogeneity from the venom of Agkistrodon contortrix contortrix by affinity chromatography on arginine-Sepharose, anionic exchange chromatography, and HPLC. The complete amino acid sequence has been determined by Edman degradation and by mass spectral analysis of peptides generated by enzymatic cleavage. A microheterogeneity at the level of residue 234 has been detected, as demonstrated by peptides differing for the occurrence of Pro234 ( approximately 85%) or Asp234 ( approximately 15%). Contortrixobin (i) has six disulfide bonds whose sequence positions have been determined by mass spectrometry and (ii) does not contain carbohydrates in its structure. As expected, the 234 residue sequence of contortrixobin exhibits strong homology with snake venom serine proteases acting on either fibrinogen or other blood coagulation components. The interaction of contortrixobin with chromogenic substrates indicates a higher specificity for arginine over lysine in the primary subsite and a faster attack to ester than amides. The hydrolytic activity of contortrixobin is strongly inhibited by diisopropyl fluorophosphate and to a less extent by phenylmethylsulfonyl fluoride, benzamidine, and 4', 6-diamidino-2-phenylindole; hirudin (a specific alpha-thrombin inhibitor) as well as basic pancreatic trypsin inhibitor has a small effect on contortrixobin's catalytic properties. Contortrixobin (i) preferentially releases fibrinopeptide B from human fibrinogen, (ii) activates blood coagulation Factors V and XIII with a rate 250-500-fold lower than human alpha-thrombin, and (iii) does not induce thrombocyte aggregation, intracytoplasmatic calcium ion increase in platelets, and activation of Factor VIII. Evidence for biorecognition properties different from thrombin is also reported.
authors.affiliation: Department of Biochemical Sciences, University of Rome "La Sapienza", Italy. gino.amiconi@uniroma1.it
authors.forename: G
authors.initials: G
authors.lastname: Amiconi
authors.forename: A
authors.initials: A
authors.lastname: Amoresano
authors.forename: G
authors.initials: G
authors.lastname: Boumis
authors.forename: A
authors.initials: A
authors.lastname: Brancaccio
authors.forename: R
authors.initials: R
authors.lastname: De Cristofaro
authors.forename: A
authors.initials: A
authors.lastname: De Pascalis
authors.forename: S
authors.initials: S
authors.lastname: Di Girolamo
authors.forename: B
authors.initials: B
authors.lastname: Maras
authors.forename: A
authors.initials: A
authors.lastname: Scaloni
mesh_terms: D017836:Agkistrodon; D000595:Amino Acid Sequence; D000818:Animals; D004220:Disulfides; D010450:Endopeptidases / Q000378:metabolism; D005340:Fibrinogen / Q000378:metabolism; D005344:Fibrinopeptide A / Q000378:metabolism; D005345:Fibrinopeptide B / Q000378:metabolism; D006801:Humans; D006868:Hydrolysis; D008969:Molecular Sequence Data; D011480:Protease Inhibitors / Q000494:pharmacology; D020539:Sequence Analysis, Protein; D012697:Serine Endopeptidases / Q000737:chemistry / Q000378:metabolism*; D012910:Snake Venoms / Q000201:enzymology; D013379:Substrate Specificity; D013917:Thrombin; D014757:Viper Venoms / Q000201:enzymology*
chemical_list: D004220:Disulfides; D011480:Protease Inhibitors; D012910:Snake Venoms; D014757:Viper Venoms; D005344:Fibrinopeptide A; D005345:Fibrinopeptide B; D005340:Fibrinogen; D010450:Endopeptidases; D012697:Serine Endopeptidases; C412879:venombin B; D013917:Thrombin