Study of amide proton exchange in 15N-enriched cryptogein using pH-dependent off-resonance ROESY-HSQC experiments.
A new pH-dependent off-resonance ROESY-HSQC experiment has been used to characterize the degree of protection of the amide protons of cryptogein, a protein of the elicitin family, against solvent exchange. The study of the pH dependence of solvent-shielded amide protons in this protein reveals that the helices have different levels of stability. Two of the five helices exhibit strong protection of amide hydrogens against exchange with the solvent. By contrast, greater flexibility is observed in the other three helices, particularly in the C-terminal helix. These results provide information on the dynamic features of the protein and are consistent with the RMSD for the backbone atoms of residues involved in helical structures. In addition, the question of the flexibility in a hydrophobic cavity made of conserved residues, which represent a plausible binding site, is addressed by this method.
Fefeu
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Laboratoire de RMN, CNRS-ICSN, Gif-sur-Yvette, France.
Birlirakis
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N
Guittet
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E
D020418:Algal Proteins; D000577:Amides / Q000737:chemistry; D005656:Fungal Proteins / Q000737:chemistry*; D006863:Hydrogen-Ion Concentration; D008958:Models, Molecular; D009587:Nitrogen Isotopes; D019906:Nuclear Magnetic Resonance, Biomolecular / Q000379:methods*; D011487:Protein Conformation; D017433:Protein Structure, Secondary; D011522:Protons; D012997:Solvents; D014867:Water / Q000737:chemistry
D020418:Algal Proteins; D000577:Amides; D005656:Fungal Proteins; D009587:Nitrogen Isotopes; D011522:Protons; D012997:Solvents; C061032:cryptogein protein, Phytophthora cryptogea; D014867:Water