title: Dynamical principles in biological processes: a model of charge migration in proteins and DNA.
abstract: The generalized master equations (GMEs) that contain multiple time scales have been derived quantum mechanically. The GME method has then been applied to a model of charge migration in proteins that invokes the hole hopping between local amino acid sites driven by the torsional motions of the floppy backbones. This model is then applied to analyze the experimental results for sequence-dependent long-range hole transport in DNA reported by Meggers et al. [Meggers, E., Michel-Beyerle, M. E., & Giese, B. (1998) J. Am. Chem. Soc. 120, 12950-12955]. The model has also been applied to analyze the experimental results of femtosecond dynamics of DNA-mediated electron transfer reported by Zewail and co-workers [Wan, C., Fiebig, T., Kelley, S. O., Treadway, C. R., Barton, J. K. & Zewail, A. H. (1999) Proc. Natl. Acad. Sci. USA 96, 6014-6019]. The initial events in the dynamics of protein folding have begun to attract attention. The GME obtained in this paper will be applicable to this problem.
authors.affiliation: Institute of Physical and Theoretical Chemistry, Technical University of Munich, Garching 85748, Germany.
authors.forename: E W
authors.initials: EW
authors.lastname: Schlag
authors.forename: D Y
authors.initials: DY
authors.lastname: Yang
authors.forename: S Y
authors.initials: SY
authors.lastname: Sheu
authors.forename: H L
authors.initials: HL
authors.lastname: Selzle
authors.forename: S H
authors.initials: SH
authors.lastname: Lin
authors.forename: P M
authors.initials: PM
authors.lastname: Rentzepis
mesh_terms: D001483:Base Sequence; D004247:DNA / Q000737:chemistry* / Q000378:metabolism; D008954:Models, Biological; D008956:Models, Chemical; D009690:Nucleic Acid Conformation; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry* / Q000378:metabolism; D011789:Quantum Theory
chemical_list: D011506:Proteins; D004247:DNA