title: Variable region diversity of the Atlantic cod (Gadus morhua L.) immunoglobulin heavy chain.
abstract: This study was undertaken to determine whether a lack of VH domain diversity could explain, in part, the failure of Atlantic cod to respond to immunization with the production of specific antibodies. The variability of cod VH regions was studied in 113 cDNA and 2 genomic clones. A fourth VH family and a second putative JH element were identified. The expressed VH repertoire showed a clear bias in the pattern of VH family utilization, with about 80% of the clones belonging to the VH-III family. Furthermore, the VH-III family was complex and could be subdivided into several subfamilies, while little variation was seen within the other families. The VH family bias gives a somewhat reduced variability of the VH gene region of cod, but not lower than that of the rabbit IgM repertoire. The H chain CDR3 region of cod was longer than that of trout, frog and mouse, and also highly variable in sequence, probably reflecting a relative importance of this region in cod. On the other hand, the CDR3 length variability was restricted, and this may reduce the diversity of the cod VH region.
authors.affiliation: Department of Marine Biotechnology, The Norwegian College of Fishery Science, University of Tromsø. joergens@nfh.uit.no
authors.forename: J
authors.initials: J
authors.lastname: Stenvik
authors.forename: A S
authors.initials: AS
authors.lastname: Lundbäck
authors.forename: T O
authors.initials: TO
authors.lastname: Jørgensen
authors.forename: L
authors.initials: L
authors.lastname: Pilström
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D003001:Cloning, Molecular; D022801:Complementarity Determining Regions; D018076:DNA, Complementary; D005399:Fishes / Q000235:genetics* / Q000276:immunology; D014644:Genetic Variation; D006801:Humans; D007143:Immunoglobulin Heavy Chains / Q000145:classification / Q000235:genetics*; D007133:Immunoglobulin Joining Region / Q000145:classification / Q000235:genetics; D007135:Immunoglobulin Variable Region / Q000145:classification / Q000235:genetics*; D051379:Mice; D008969:Molecular Sequence Data; D010802:Phylogeny; D011817:Rabbits; D017386:Sequence Homology, Amino Acid
chemical_list: D022801:Complementarity Determining Regions; D018076:DNA, Complementary; D007143:Immunoglobulin Heavy Chains; D007133:Immunoglobulin Joining Region; D007135:Immunoglobulin Variable Region