NF1 gene analysis focused on CpG-rich exons in a cohort of 93 patients with neurofibromatosis type 1.
We studied the NF1 gene in 93 unrelated patients with neurofibromatosis type1, focusing the analysis on four exons that contain the highest number of possible mutations occurring at CpG sites. We used denaturing gradient gel electrophoresis to analyse exons 16, 28, 29 and 49, which contain 45 (25%) of the 183 possible mutations that could occur at the 120 CpG dinucleotides of the coding sequence. Six different mutations were identified, five of which are novel: two truncating mutations, W1810X and 5448insG, located in exon29; two splice defects leading to exon29 skipping, 5206-2A>G and 5546G>A; and one missense mutation, L844F, located in exon16. The already described R1748X mutation located in exon29 was found in two unrelated patients. The 5546G>A and R1748X mutations are located at CpG sites, whereas the W1810X involves a CpNpG site. Four novel polymorphisms, which may be helpful for family studies, were also identified. Overall, all but one mutations were found in exon29, a result which suggests that all the CpG sites of the NF1 coding sequence do not have the same mutability, and that exon29, the most CpG-rich exon, contains mutational hotspots associated with NF1.
Girodon-Boulandet
E
E
Service de Biochimie et de Génétique and INSERM U468, Hôpital Henri-Mondor, 94010 Créteil Cedex, France.
Pantel
J
J
Cazeneuve
C
C
Gijn
M V
MV
Vidaud
D
D
Lemay
S
S
Martin
J
J
Zeller
J
J
Revuz
J
J
Goossens
M
M
Amselem
S
S
Wolkenstein
P
P
D000293:Adolescent; D000328:Adult; D000368:Aged; D002460:Cell Line; D002648:Child; D015331:Cohort Studies; D018899:CpG Islands / Q000235:genetics*; D004252:DNA Mutational Analysis; D004587:Electrophoresis, Agar Gel / Q000379:methods; D004591:Electrophoresis, Polyacrylamide Gel; D005091:Exons / Q000235:genetics*; D016514:Genes, Neurofibromatosis 1; D006801:Humans; D008875:Middle Aged; D009154:Mutation; D009456:Neurofibromatosis 1 / Q000235:genetics*; D009691:Nucleic Acid Denaturation / Q000235:genetics