title: Genotyping of Bacteroides fragilis isolates from stool specimens by arbitrarily-primed-PCR.
abstract: In order to determine genetic relatedness of Bacteroides fragilis isolates from different clinical sources, arbitrarily primed polymerase chain reaction (PCR) (AP-PCR) was used to compare 17 strains isolated from patients with inflammatory bowel disease (IBD) and 20 strains isolated from foals with diarrhea. Three reference ATCC strains were also analyzed. Eighteen unique types were identified with a 22-mer arbitrary primer (ERIC-2) among the 20 patient isolates. Types 1 (enterotoxigenic) and 9 (nonenterotoxigenic), were each found in the stools of two patients. All other isolates showed a distinct and unique DNA banding pattern indicating a high degree of genotypic variability. Eleven types were identified among the foal isolates. Type 20, a nonenterotoxigenic type, was present in 30% of the foals. No correlation was found between the human and horse isolates. No clear relationship between a disease state (diarrhea or IBD) and specific types was observed. AP-PCR will be useful as a rapid method to determine genetic relatedness and in future epidemiologic studies of diarrheal diseases due to B. fragilis.
authors.affiliation: Department of Internal Medicine, Division of Infectious and Immunologic Diseases, University of California, Davis Medical Center, Sacramento, CA 95817, USA.
authors.forename: P N
authors.initials: PN
authors.lastname: Sarma
authors.forename: Y J
authors.initials: YJ
authors.lastname: Tang
authors.forename: T P
authors.initials: TP
authors.lastname: Prindiville
authors.forename: P D
authors.initials: PD
authors.lastname: Osborne
authors.forename: S
authors.initials: S
authors.lastname: Jang
authors.forename: J
authors.initials: J
authors.lastname: Silva
authors.forename: S H
authors.initials: SH
authors.lastname: Cohen
mesh_terms: D000818:Animals; D001441:Bacteroides fragilis / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D004269:DNA, Bacterial / Q000032:analysis; D003967:Diarrhea / Q000382:microbiology / Q000662:veterinary*; D004768:Enterotoxins / Q000235:genetics; D005243:Feces / Q000382:microbiology*; D005838:Genotype; D006734:Horse Diseases / Q000382:microbiology*; D006736:Horses; D006801:Humans; D015212:Inflammatory Bowel Diseases / Q000382:microbiology*; D016133:Polymerase Chain Reaction
chemical_list: D004269:DNA, Bacterial; D004768:Enterotoxins