title: Codon optimization of xylanase gene xynB from the thermophilic bacterium Dictyoglomus thermophilum for expression in the filamentous fungus Trichoderma reesei.
abstract: The catalytic domain of the xynB (xylanase) gene from the thermophilic bacterium Dictyoglomus thermophilum was reconstructed by PCR to match the codon preference of Trichoderma reesei. The 0.6-kb DNA fragment encoding the enzyme was first amplified by primer extension with a mixture of eight overlapping oligonucleotides, followed by PCR with outside primers containing restriction enzyme sites for directional cloning into Escherichia coli and T. reesei vectors. The synthetic gene was expressed in both organisms, producing a clearing halo around transformant colonies in plate assay utilizing an overlay of oat spelts xylan. Effective transcription of xyn B in T. reesei was obtained after changing 20 codons.
authors.affiliation: Department of Biological Sciences, Macquarie University, Sydney, NSW, Australia.
authors.forename: V S
authors.initials: VS
authors.lastname: Te'o
authors.forename: A E
authors.initials: AE
authors.lastname: Cziferszky
authors.forename: P L
authors.initials: PL
authors.lastname: Bergquist
authors.forename: K M
authors.initials: KM
authors.lastname: Nevalainen
mesh_terms: D000595:Amino Acid Sequence; D001419:Bacteria / Q000201:enzymology* / Q000235:genetics; D015152:Blotting, Northern; D020134:Catalytic Domain; D003001:Cloning, Molecular; D003062:Codon / Q000235:genetics*; D043364:Endo-1,4-beta Xylanases; D004926:Escherichia coli / Q000235:genetics / Q000378:metabolism; D008969:Molecular Sequence Data; D011994:Recombinant Proteins / Q000737:chemistry / Q000378:metabolism; D017422:Sequence Analysis, DNA; D013696:Temperature; D014242:Trichoderma / Q000235:genetics* / Q000378:metabolism; D014990:Xylans / Q000378:metabolism; D014995:Xylosidases / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism*; D001617:beta-Glucosidase / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism*
chemical_list: D003062:Codon; D011994:Recombinant Proteins; D014990:Xylans; D014995:Xylosidases; D001617:beta-Glucosidase; D043364:Endo-1,4-beta Xylanases; C090001:XynB xylanase