title: Active site generation of a protonically unstable suicide substrate from a stable precursor: glucose oxidase and dibromonitromethane.
abstract: Bromonitromethane is an inefficient suicide substrate for glucose oxidase (in contrast to the case of CH(3)CCl=NO(2)(-) and D-amino acid oxidase) because, in the enzyme-substrate encounter step, the required ionization states of enzyme (EH(0)(+), pK(a) approximately 3.5) and substrate (CHBr=NO(2)(-), pK(a) approximately 8.3) cannot be highly populated simultaneously. Because reprotonation of CHBr=NO(2)(-) is rapid at the pH value used for the assay of glucose oxidase, presentation of the enzyme with the preformed anion could not be exploited in this case. We circumvent this difficulty by allowing the enzyme to reductively dehalogenate CHBr(2)NO(2), thereby generating the desired protonically unstable suicide substrate in situ (E(r) + CHBr(2)NO(2) --> E(o) + CHBr=NO(2)(-) + HBr + H(+)). Irreversible inactivation of the enzyme, because of the formation of a dead-end N-5 formylflavin adduct, is more than 100-fold faster when CHBr=NO(2)(-) is generated in situ than when it is externally applied. The remaining competitive fates of CHBr=NO(2)(-) at the active site are protonation and release or oxidation to HCOBr (or HCONO(2)). Strong support for these conclusions comes from (1) the brisk evolution of CH(3)CBr=NO(2)(-) (which is too bulky to act further as an efficient suicide substrate) from the enzyme-catalyzed reductive debromination of CH(3)CBr(2)NO(2), (2) the 1:1 stoichiometry of enzyme inactivation, and (3) the identification of the modified flavin as 5-formyl-1, 5-dihydro-FAD.
authors.affiliation: Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA. djp39807@glaxowellcome.com
authors.forename: D J
authors.initials: DJ
authors.lastname: Porter
authors.forename: J G
authors.initials: JG
authors.lastname: Voet
authors.forename: H J
authors.initials: HJ
authors.lastname: Bright
mesh_terms: D000838:Anions; D001234:Aspergillus niger / Q000201:enzymology; D001665:Binding Sites; D001966:Bromine / Q000737:chemistry; D049308:Dioxygenases; D004791:Enzyme Inhibitors / Q000737:chemistry; D004792:Enzyme Precursors / Q000737:chemistry*; D005182:Flavin-Adenine Dinucleotide / Q000031:analogs & derivatives* / Q000737:chemistry; D005947:Glucose / Q000737:chemistry; D005949:Glucose Oxidase / Q000037:antagonists & inhibitors* / Q000737:chemistry*; D007700:Kinetics; D008697:Methane / Q000031:analogs & derivatives* / Q000737:chemistry*; D009595:Nitroparaffins / Q000737:chemistry*; D010105:Oxygenases / Q000737:chemistry; D011522:Protons; D013329:Structure-Activity Relationship; D013379:Substrate Specificity
chemical_list: D000838:Anions; D004791:Enzyme Inhibitors; D004792:Enzyme Precursors; D009595:Nitroparaffins; D011522:Protons; D005182:Flavin-Adenine Dinucleotide; C029276:flavin semiquinone; D005949:Glucose Oxidase; D010105:Oxygenases; D049308:Dioxygenases; C021876:2-nitropropane dioxygenase; D005947:Glucose; D008697:Methane; C008640:nitromethane; D001966:Bromine