title: Influence of the hydrophilic face on the folding ability and stability of alpha-helix bundles: relevance to the peptide catalytic activity.
abstract: Although not the sole feature responsible, the packing of amino acid side chains in the interior of proteins is known to contribute to protein conformational specificity. While a number of amphipathic peptide sequences with optimized hydrophobic domains has been designed to fold into a desired aggregation state, the contribution of the amino acids located on the hydrophilic side of such peptides to the final packing has not been investigated thoroughly. A set of self-aggregating 18-mer peptides designed previously to adopt a high level of alpha-helical conformation in benign buffer is used here to evaluate the effect of the nature of the amino acids located on the hydrophilic face on the packing of a four alpha-helical bundle. These peptides differ from one another by only one to four amino acid mutations on the hydrophilic face of the helix and share the same hydrophobic core. The secondary and tertiary structures in the presence or absence of denaturants were determined by circular dichroism in the far- and near-UV regions, fluorescence and nuclear magnetic resonance spectroscopy. Significant differences in folding ability, as well as chemical and thermal stabilities, were found between the peptides studied. In particular, surface salt bridges may form which would increase both the stability and extent of the tertiary structure of the peptides. The structural behavior of the peptides may be related to their ability to catalyze the decarboxylation of oxaloacetate, with peptides that have a well-defined tertiary structure acting as true catalysts.
authors.affiliation: Torrey Pines Institute for Molecular Studies, San Diego, California 92121, USA. sblondelle@tpims.org
authors.forename: S E
authors.initials: SE
authors.lastname: Blondelle
authors.forename: V
authors.initials: V
authors.lastname: Esteve
authors.forename: B
authors.initials: B
authors.lastname: Celda
authors.forename: M T
authors.initials: MT
authors.lastname: Pastor
authors.forename: E
authors.initials: E
authors.lastname: Pérez-Payá
mesh_terms: D000595:Amino Acid Sequence; D000596:Amino Acids / Q000737:chemistry*; D000817:Anilino Naphthalenesulfonates / Q000378:metabolism; D016880:Anisotropy; D020134:Catalytic Domain; D002851:Chromatography, High Pressure Liquid; D002942:Circular Dichroism; D003653:Decarboxylation; D004795:Enzyme Stability; D005453:Fluorescence; D019791:Guanidine / Q000737:chemistry; D006358:Hot Temperature; D008958:Models, Molecular; D008969:Molecular Sequence Data; D019906:Nuclear Magnetic Resonance, Biomolecular; D062907:Oxaloacetic Acid / Q000737:chemistry / Q000378:metabolism; D010446:Peptide Fragments / Q000737:chemistry*; D017510:Protein Folding; D017433:Protein Structure, Secondary
chemical_list: D000596:Amino Acids; D000817:Anilino Naphthalenesulfonates; D010446:Peptide Fragments; D062907:Oxaloacetic Acid; D019791:Guanidine