Relationship between whole proteome aminoacid composition and static DNA curvature.
To study possible relationships between an organism's genomic DNA curvature and the aminoacid composition of its proteome, every peptidic sequence from fully determined genomes was retrotranslated using the E. coli codon preferences, and the curvature profiles of the resulting DNA sequences were calculated and compared. A clear interdependence between these two variables was observed, as each retrotranslated proteome presented a distinctive, statistically significant DNA curvature profile biased toward its natural DNA curvature profile. In addition, by comparing the profiles arising from real and randomly permuted proteomes, we also found a position-dependent contribution of the peptidic sequence to DNA curvature. The implications of these results support the idea of a possible selection toward a specific global curvature of genomes.
Jáuregui
R
R
Departamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico.
Bolivar
F
F
Merino
E
E
D000596:Amino Acids / Q000032:analysis*; D019295:Computational Biology; D004247:DNA / Q000737:chemistry*; D016678:Genome; D009690:Nucleic Acid Conformation; D020543:Proteome / Q000737:chemistry*; D013045:Species Specificity
D000596:Amino Acids; D020543:Proteome; D004247:DNA