title: Genetic modulation of T cell receptor gene segment usage during somatic recombination.
abstract: Lymphocyte antigen receptors are not encoded by germline genes, but rather are produced by combinatorial joining between clusters of gene segments in somatic cells. Within a given cluster, gene segment usage during recombination is thought to be largely random, with biased representation in mature T lymphocytes resulting from protein-mediated selection of a subset of the total repertoire. Here we show that T cell receptor D beta and J beta gene segment usage is not random, but is patterned at the time of recombination. The hierarchy of gene segment usage is independent of gene segment proximity, but rather is influenced by the ability of the flanking recombination signal sequences (RSS) to bind the recombinase and/or to form a paired synaptic complex. Importantly, the relative frequency of gene segment usage established during recombination is very similar to that found after protein-mediated selection, suggesting that in addition to targeting recombinase activity, the RSS may have evolved to bias the naive repertoire in favor of useful gene products.
authors.affiliation: Section of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 08360, USA.
authors.forename: F
authors.initials: F
authors.lastname: Livak
authors.forename: D B
authors.initials: DB
authors.lastname: Burtrum
authors.forename: L
authors.initials: L
authors.lastname: Rowen
authors.forename: D G
authors.initials: DG
authors.lastname: Schatz
authors.forename: H T
authors.initials: HT
authors.lastname: Petrie
mesh_terms: D000818:Animals; D001483:Base Sequence; D016384:Consensus Sequence; D017931:DNA Primers; D004275:DNA, Ribosomal / Q000235:genetics; D019672:Genes, T-Cell Receptor; D019674:Genes, T-Cell Receptor beta; D007668:Kidney / Q000276:immunology; D051379:Mice; D008810:Mice, Inbred C57BL; D016133:Polymerase Chain Reaction; D011995:Recombination, Genetic; D013601:T-Lymphocytes / Q000276:immunology*
chemical_list: D017931:DNA Primers; D004275:DNA, Ribosomal