Oxygen and acrylamide quenching of protein phosphorescence: correlation with protein dynamics.
Oxygen quenching of protein phosphorescence and activation enthalpies for the structural fluctuations underlying O2 and acrylamide diffusion were determined for RNase T1, glyceraldehyde-3-phosphate dehydrogenase and beta-lactoglobulin, which have the phosphorescing residues located in relatively solvent-exposed and flexible regions of the polypeptide. The results, compared with those obtained for proteins characterised by a very rigid environment, established that kqO2 was directly correlated to the flexibility of the protein matrix surrounding the chromophore. While the migration of acrylamide was characterised by delta H(double dagger), which was strongly dependent on the fluidity of the structure about the Trp residue, the values of the activation enthalpies for the oxygen migration of all the proteins studied were rather similar, approximately 10 kcal mol(-1), in spite of the depth of the chromophore and the rigidity of its environment. The implications of these findings for the migration of small solutes inside proteins have been discussed.
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Istituto di Biofisica, Consiglio Nazionale delle Ricerche, Pisa, Italy. patrizia@ib.pi.cnr.it
D020106:Acrylamide / Q000378:metabolism*; D000818:Animals; D004058:Diffusion; D005987:Glyceraldehyde-3-Phosphate Dehydrogenases / Q000737:chemistry / Q000378:metabolism; D007700:Kinetics; D007782:Lactoglobulins / Q000737:chemistry / Q000378:metabolism; D008163:Luminescent Measurements; D010100:Oxygen / Q000378:metabolism*; D011506:Proteins / Q000737:chemistry* / Q000378:metabolism; D006163:Ribonuclease T1 / Q000737:chemistry / Q000378:metabolism; D013696:Temperature; D013816:Thermodynamics; D014783:Viscosity
D007782:Lactoglobulins; D011506:Proteins; D020106:Acrylamide; D005987:Glyceraldehyde-3-Phosphate Dehydrogenases; D006163:Ribonuclease T1; D010100:Oxygen