title: Comparative quantification of diverse serotypes of HIV-1 in plasma from a diverse population of patients.
abstract: HIV-1 is characterised by extensive genetic variability encompassing at least 10 different phylogenetically related clades within the major group of HIV-1 subtypes. Most commercially available HIV-1 RNA plasma viral load assays have been optimised with clade B viruses and may yield misleadingly low RNA levels for nonclade B viruses that are increasingly found in Europe. In this study we compare the most recent versions of the Roche Amplicor HIV Monitor and the Chiron Quantiplex for ability to detect viraemia in a population of patients infected with a range of HIV-1 subtypes. EDTA-treated plasma was obtained from 206 patients. The Amplicor and Quantiplex assays were carried out in accordance with manufacturers' instructions. Results from 53/206 (25.7%) samples differed by >0.4 log between Amplicor 1.5 and Quantiplex 3.0. A >0.5 log and 1.0 log difference was detected between Amplicor 1.5 and Quantiplex 3.0 in 37/206 (17.9%) and 7/206 (3.4%) of samples, respectively. Overall, Amplicor 1.5 gave a median value of 0.22 log higher than Quantiplex 3.0. Discordant results were detected in 53 out of 206 (25.7%) samples. Of these 22 out of 123 (17.9%) samples were of UK origin, 18 out of 43 (41.9%) African, 1 out of 8 (12.5%) South American, 1 out of 6 (16.7%) North American, 4 out of 9 (44.4%) North European, 3 out of 11 (23.7%) South European and 3 out of 7 (42.3%) Asian samples, respectively. Serotyping revealed that discordant viral load results between Amplicor 1.5 and Quantiplex 3.0 occurred within samples from all subtypes (A-E). Despite the improvements made to both the Roche Amplicor and the Chiron Quantiplex assays discordant results were detected between the two assays in 25.7% of cases. In a substantial minority of patients there were major discrepancies between the two assays that were not explained by HIV subtype differences.
authors.affiliation: Department of Genitourinary Medicine and Communicable Diseases, Jefferiss Research Trust Laboratories, Division of Medicine, Imperial College School of Medicine at St. Mary's Hospital, London, United Kingdom. j.r.clarke@ic.ac.uk
authors.forename: J R
authors.initials: JR
authors.lastname: Clarke
authors.forename: S
authors.initials: S
authors.lastname: Galpin
authors.forename: R
authors.initials: R
authors.lastname: Braganza
authors.forename: A
authors.initials: A
authors.lastname: Ashraf
authors.forename: R
authors.initials: R
authors.lastname: Russell
authors.forename: D R
authors.initials: DR
authors.lastname: Churchill
authors.forename: J N
authors.initials: JN
authors.lastname: Weber
authors.forename: M O
authors.initials: MO
authors.lastname: McClure
mesh_terms: D015658:HIV Infections / Q000097:blood / Q000188:drug therapy / Q000821:virology*; D015497:HIV-1 / Q000145:classification / Q000235:genetics / Q000302:isolation & purification*; D006801:Humans; D012367:RNA, Viral / Q000097:blood*; D011933:Reagent Kits, Diagnostic; D015203:Reproducibility of Results; D012703:Serotyping; D019562:Viral Load
chemical_list: D012367:RNA, Viral; D011933:Reagent Kits, Diagnostic