title: Gene expression monitoring for gene discovery in models of peripheral and central nervous system differentiation, regeneration, and trauma.
abstract: Gene expression monitoring using gene expression microarrays represents an extremely powerful technology for gene discovery in a variety of systems. We describe the results of seven experiments using Incyte GEM technology to compile a proprietary portfolio of data concerning differential gene expression in six different models of neuronal differentiation and regeneration, and recovery from injury or disease. Our first two experiments cataloged genes significantly up- or down-regulated during two phases of the retinoic acid-induced differentiation of the embryonal carcinoma line Ntera-2. To identify genes involved in neuronal regeneration we performed three GEM experiments, which included changes in gene expression in rat dorsal root ganglia during the healing of experimentally injured sciatic nerve, in regenerating neonatal opossum spinal cord, and during lipopolysaccharide stimulation of primary cultures of rat Schwann cells. Finally we have monitored genes involved in the recovery phase of the inflammatory disease of the rat spinal cord, experimental allergic encephalomyelitis, as well as those responsible for protection from oxidative stress in a glutamate-resistant rat hippocampal cell line. Analysis of the results of the approximately 70,000 data points collected is presented.
authors.affiliation: The Immune Response Corporation, Carlsbad, California 92008, USA.
authors.forename: D N
authors.initials: DN
authors.lastname: Farlow
authors.forename: G
authors.initials: G
authors.lastname: Vansant
authors.forename: A A
authors.initials: AA
authors.lastname: Cameron
authors.forename: J
authors.initials: J
authors.lastname: Chang
authors.forename: S
authors.initials: S
authors.lastname: Khoh-Reiter
authors.forename: N L
authors.initials: NL
authors.lastname: Pham
authors.forename: W
authors.initials: W
authors.lastname: Wu
authors.forename: Y
authors.initials: Y
authors.lastname: Sagara
authors.forename: J G
authors.initials: JG
authors.lastname: Nicholls
authors.forename: D J
authors.initials: DJ
authors.lastname: Carlo
authors.forename: C R
authors.initials: CR
authors.lastname: Ill
mesh_terms: D000818:Animals; D002454:Cell Differentiation / Q000187:drug effects / Q000235:genetics*; D002490:Central Nervous System / Q000166:cytology / Q000378:metabolism* / Q000473:pathology / Q000502:physiology; D005260:Female; D020869:Gene Expression Profiling; D008070:Lipopolysaccharides / Q000494:pharmacology; D012333:RNA, Messenger / Q000235:genetics; D051381:Rats; D011917:Rats, Inbred Lew; D017207:Rats, Sprague-Dawley; D012583:Schwann Cells / Q000166:cytology / Q000187:drug effects; D014212:Tretinoin / Q000494:pharmacology; D014407:Tumor Cells, Cultured; D014947:Wounds and Injuries / Q000235:genetics*
chemical_list: D008070:Lipopolysaccharides; D012333:RNA, Messenger; D014212:Tretinoin