FULL-malaria: a database for a full-length enriched cDNA library from human malaria parasite, Plasmodium falciparum.
FULL-malaria is a database for a full-length-enriched cDNA library from the human malaria parasite Plasmodium falciparum (http://133.11. 149.55/). Because of its medical importance, this organism is the first target for genome sequencing of a eukaryotic pathogen; the sequences of two of its 14 chromosomes have already been determined. However, for the full exploitation of this rapidly accumulating information, correct identification of the genes and study of their expression are essential. Using the oligo-capping method, we have produced a full-length-enriched cDNA library from erythrocytic stage parasites and performed one-pass reading. The database consists of nucleotide sequences of 2490 random clones that include 390 (16%) known malaria genes according to BLASTN analysis of the nr-nt database in GenBank; these represent 98 genes, and the clones for 48 of these genes contain the complete protein-coding sequence (49%). On the other hand, comparisons with the complete chromosome 2 sequence revealed that 35 of 210 predicted genes are expressed, and in addition led to detection of three new gene candidates that were not previously known. In total, 19 of these 38 clones (50%) were full-length. From these observations, it is expected that the database contains approximately 1000 genes, including 500 full-length clones. It should be an invaluable resource for the development of vaccines and novel drugs.
Watanabe
J
J
Department of Parasitology, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minatoku, Tokyo 108-8639, Japan. jwatanab@manage.ims.u-tokyo.ac.jp
Sasaki
M
M
Suzuki
Y
Y
Sugano
S
S
D000818:Animals; D018076:DNA, Complementary / Q000235:genetics; D016208:Databases, Factual; D004912:Erythrocytes / Q000469:parasitology; D015723:Gene Library; D006801:Humans; D020407:Internet; D016778:Malaria, Falciparum / Q000097:blood / Q000469:parasitology; D008969:Molecular Sequence Data; D010963:Plasmodium falciparum / Q000235:genetics*
D018076:DNA, Complementary