title: Assessment of intercentre reproducibility and epidemiological concordance of Legionella pneumophila serogroup 1 genotyping by amplified fragment length polymorphism analysis.
abstract: The aims of this work were to assess (i) the intercentre reproducibility and epidemiological concordance of amplified fragment length polymorphism analysis for epidemiological typing of Legionella pneumophila serogroup 1, and (ii) the suitability of the method for standardisation and implementation by members of the European Working Group on Legionella Infections. Fifty coded isolates comprising two panels of well-characterised strains, a "reproducibility" panel (n=20) and an "epidemiologically related" panel (n=30), were sent to 13 centres in 12 European countries. Analysis was undertaken in each centre following a previously determined standard protocol. Results were analysed by the participants, using gel analysis software where available, and submitted to the coordinating centre. The coordinating centre reanalysed all results visually and selected data-sets with gel analysis software. Data analysis by participants yielded reproducibility (R) values of 0.20-1.00 and epidemiological concordance (E) values of 0.11-1.00, with 6 to 34 types. Following visual analysis by the coordinating centre, R=0.78-1.00, and E=0.67-1.00, with 10-20 types. Analysis of three data-sets by the coordinating centre using gel analysis software yielded R=1.00 and E=1.00, with 12, 13 or 14 types. This method can be used as a simple, rapid screening tool for epidemiological typing of isolates of Legionella pneumophila serogroup 1. Results demonstrate that the method can be highly reproducible (R=1.00) and epidemiologically concordant (E=1.00), with good discrimination. The electropherograms generated are amenable to computer-aided analysis, but strict adherence to a previously defined laboratory protocol is required. Following designation of representative type strains and patterns, this method will be adopted by the European Working Group on Legionella Infections as the first internationally standardised typing method for use in the investigation of travel-associated Legionella infections.
authors: Respiratory and Systemic Infection Laboratory, London, UK. nfry@phls.nhs.uk
authors: N K
authors: NK
authors: Fry
authors: J M
authors: JM
authors: Bangsborg
authors: S
authors: S
authors: Bernander
authors: J
authors: J
authors: Etienne
authors: B
authors: B
authors: Forsblom
authors: V
authors: V
authors: Gaia
authors: P
authors: P
authors: Hasenberger
authors: D
authors: D
authors: Lindsay
authors: A
authors: A
authors: Papoutsi
authors: C
authors: C
authors: Pelaz
authors: M
authors: M
authors: Struelens
authors: S A
authors: SA
authors: Uldum
authors: P
authors: P
authors: Visca
authors: T G
authors: TG
authors: Harrison
mesh_terms: D004269:DNA, Bacterial / Q000032:analysis; D005060:Europe / Q000453:epidemiology; D005838:Genotype; D006801:Humans; D016952:Legionella pneumophila / Q000145:classification* / Q000235:genetics / Q000276:immunology; D007877:Legionnaires' Disease / Q000453:epidemiology / Q000382:microbiology; D015337:Multicenter Studies as Topic; D011110:Polymorphism, Genetic; D012150:Polymorphism, Restriction Fragment Length; D015203:Reproducibility of Results; D012703:Serotyping
chemical_list: D004269:DNA, Bacterial