title: The rat ortholog of the presumptive flounder antifreeze enhancer-binding protein is a helicase domain-containing protein.
abstract: The expression of winter flounder liver-type antifreeze protein (wflAFP) genes is tissue-specific and under seasonal and hormonal regulation. The only intron of the major wflAFP gene was demonstrated to be a liver-specific enhancer in both mammalian cell lines and flounder hepatocytes. Element B, the core enhancer sequence, was shown to interact specifically with a liver-enriched transcription factor, CCAAT/enhancer-binding protein alpha (C/EBPalpha), as well as a presumptive antifreeze enhancer-binding protein (AEP). In this study, the identity of the rat AEP ortholog was revealed via its DNA-protein interaction with element B. It is a helicase-domain-containing protein, 988 amino acids in length, and is homologous to mouse Smubp-2, hamster Rip-1 and human Smubp-2. The specific binding between element B and AEP was confirmed by South-Western analysis and gel retardation assays. Residues in element B important to this interaction were identified by methylation interference assays. Mutation on one of the residues disrupted the binding between element B and AEP and its enhancer activity was significantly reduced, suggesting that AEP is essential for the transactivation of the wflAFP gene intron. The rat AEP is ubiquitously expressed in various tissues, and the flounder homolog is present as shown by genomic Southern analysis. The potential role of AEP in regulating the flounder AFP gene expression is discussed.
authors: Division of Structural Biology and Biochemistry, Hospital for Sick Children, and Departments of Biochemistry and Laboratory Medicine & Pathobiology, University of Toronto, Toronto, Ontario, Canada. m.miao@utoronto.ca
authors: M
authors: M
authors: Miao
authors: S L
authors: SL
authors: Chan
authors: G L
authors: GL
authors: Fletcher
authors: C L
authors: CL
authors: Hew
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D021301:Antifreeze Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D022763:CCAAT-Enhancer-Binding Protein-alpha / Q000737:chemistry / Q000378:metabolism*; D002460:Cell Line; D003001:Cloning, Molecular; D004265:DNA Helicases / Q000378:metabolism*; D018076:DNA, Complementary; D005432:Flounder; D006801:Humans; D008969:Molecular Sequence Data; D016366:Open Reading Frames; D051381:Rats; D020133:Reverse Transcriptase Polymerase Chain Reaction; D017386:Sequence Homology, Amino Acid
chemical_list: D021301:Antifreeze Proteins; D022763:CCAAT-Enhancer-Binding Protein-alpha; D018076:DNA, Complementary; D004265:DNA Helicases