PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB).
PDB-REPRDB is a database of representative protein chains from the Protein Data Bank (PDB). The previous version of PDB-REPRDB provided 48 representative sets, whose similarity criteria were predetermined, on the WWW. The current version is designed so that the user may obtain a quick selection of representative chains from PDB. The selection of representative chains can be dynamically configured according to the user's requirement. The WWW interface provides a large degree of freedom in setting parameters, such as cut-off scores of sequence and structural similarity. One can obtain a representative list and classification data of protein chains from the system. The current database includes 20 457 protein chains from PDB entries (August 6, 2000). The system for PDB-REPRDB is available at the Parallel Protein Information Analysis system (PAPIA) WWW server (http://www.rwcp.or.jp/papia/).
Noguchi
T
T
Computational Biology Research Laboratory, Electrotechnical Laboratory, 1-1-4 Umezono, Tsukuba,Ibaraki 305-5868, Japan. tnoguchi@etl.go.jp
Matsuda
H
H
Akiyama
Y
Y
D016208:Databases, Factual; D016247:Information Storage and Retrieval; D020407:Internet; D009682:Magnetic Resonance Spectroscopy; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry*
D011506:Proteins