title: Internal motional amplitudes and correlated bond rotations in an alpha-helical peptide derived from 13C and 15N NMR relaxation.
abstract: Peptide GFSKAELAKARAAKRGGY folds in an alpha-helical conformation that is stabilized by formation of a hydrophobic staple motif and an N-terminal capping box (Munoz V. Blanco FJ, Serrano L, 1995, Struct Biol 2:380-385). To investigate backbone and side-chain internal motions within the helix and hydrophobic staple, residues F2, A5, L7, A8, and A10 were selectively 13C- and 15N-enriched and NMR relaxation experiments were performed in water and in water/trifluoroethanol (TFE) solution at four Larmor frequencies (62.5, 125, 150, and 200 MHz for 13C). Relaxation data were analyzed using the model free approach and an anisotropic diffusion model. In water, angular variances of motional vectors range from 10 to 20 degrees and backbone phi,psi bond rotations for helix residues A5, L7, A8, and A10 are correlated indicating the presence of Calpha-H, Calpha-Cbeta, and N-H rocking-type motions along the helix dipole axis. L7 side-chain CbetaH2 and CgammaH motions are also correlated and as motionally restricted as backbone CalphaH, suggesting considerable steric hindrance with neighboring groups. In TFE which stabilizes the fold, internal motional amplitudes are attenuated and rotational correlations are increased. For the side chain of hydrophobic staple residue F2, wobbling-in-a-cone type motions dominate in water, whereas in TFE, the Cbeta-Cgamma bond and phenyl ring fluctuate more simply about the Calpha-Cbeta bond. These data support the Daragan-Mayo model of correlated bond rotations (Daragan VA, Mayo KH, 1996, J Phys Chem 100:8378-8388) and contribute to a general understanding of internal motions in peptides and proteins.
authors.affiliation: Department of Biochemistry, Molecular Biology & Biophysics and the Biomedical Engineering Center, University of Minnesota Health Science Center, Minneapolis 55455, USA.
authors.forename: D
authors.initials: D
authors.lastname: Idiyatullin
authors.forename: A
authors.initials: A
authors.lastname: Krushelnitsky
authors.forename: I
authors.initials: I
authors.lastname: Nesmelova
authors.forename: F
authors.initials: F
authors.lastname: Blanco
authors.forename: V A
authors.initials: VA
authors.lastname: Daragan
authors.forename: L
authors.initials: L
authors.lastname: Serrano
authors.forename: K H
authors.initials: KH
authors.lastname: Mayo
mesh_terms: D000595:Amino Acid Sequence; D016880:Anisotropy; D002244:Carbon / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy; D008956:Models, Chemical; D015233:Models, Statistical; D008969:Molecular Sequence Data; D009584:Nitrogen / Q000737:chemistry*; D010455:Peptides / Q000737:chemistry*; D011487:Protein Conformation; D017433:Protein Structure, Secondary; D011522:Protons; D013696:Temperature; D013816:Thermodynamics; D014270:Trifluoroethanol / Q000737:chemistry; D014867:Water / Q000737:chemistry
chemical_list: D010455:Peptides; D011522:Protons; D014867:Water; D002244:Carbon; D014270:Trifluoroethanol; D009584:Nitrogen