title: ASAP: analysis of peptide composition.
abstract: ASAP is a web tool designed to search for specific dipeptides, tripeptides and tetrapeptides in a protein sequence database. The server allows for: (a) identification of frequent and infrequent peptides and the creation of peptide probability tables for a given database of sequences (GenerNet program), (b) determination of the compatibility of an amino-acid sequence to the given peptide probability tables (ClonErrNet program); and (c) comparison of different protein databases based on peptide composition (CompNet program). ASAP server can be useful in protein engineering and/or protein classification studies.
authors.affiliation: Institut de Biologia Fonamental, Universitat Autònoma de Barcelona, 08193 Bellaterra (Barcelona), Spain.
authors.forename: X
authors.initials: X
authors.lastname: Serra-Hartmann
authors.forename: X
authors.initials: X
authors.lastname: Rebordosa
authors.forename: J
authors.initials: J
authors.lastname: Piñol
authors.forename: E
authors.initials: E
authors.lastname: Querol
authors.forename: M A
authors.initials: MA
authors.lastname: Martí-Renom
mesh_terms: D019295:Computational Biology; D016208:Databases, Factual; D020407:Internet; D009842:Oligopeptides / Q000737:chemistry*; D011506:Proteins / Q000737:chemistry; D016415:Sequence Alignment / Q000706:statistics & numerical data*; D020539:Sequence Analysis, Protein / Q000706:statistics & numerical data*; D012984:Software
chemical_list: D009842:Oligopeptides; D011506:Proteins