Circles: automating the comparative analysis of RNA secondary structure.
Circles is a program for inferring RNA secondary structure using maximum weight matching. The program can read in an alignment in FASTA, ClustalW, or NEXUS format, compute a maximum weight matching, and export one or more secondary structures in various file formats.


BACKGROUND
The program is available at no cost from http://taxonomy.zoology.gla.ac.uk/rod/circles/ and requires Windows 95/98/NT.


BACKGROUND
r.page@bio.gla.ac.uk
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Division of Environmental and Evolutionary Biology, Institute of Biomedical and Life Sciences, Graham Kerr Building, University of Glasgow, Glasgow G12 8QQ, UK. r.page@bio.gla.ac.uk
D001483:Base Sequence; D019295:Computational Biology; D003196:Computer Graphics; D009690:Nucleic Acid Conformation; D012313:RNA / Q000737:chemistry* / Q000235:genetics; D012689:Sequence Homology, Nucleic Acid; D012984:Software; D014584:User-Computer Interface
D012313:RNA