title: Fine mapping of the chromosome 3p susceptibility locus in inflammatory bowel disease.
abstract: OBJECTIVE
  Genetic predisposition for inflammatory bowel disease (IBD) has been demonstrated by epidemiological and genetic linkage studies. Genetic linkage of IBD to chromosome 3 has been observed previously. A high density analysis of chromosome 3p was performed to confirm prior linkages and elucidate potential genetic associations.
  
  
  METHODS
  Forty three microsatellite markers on chromosome 3 were genotyped in 353 affected sibling pairs of North European Caucasian extraction (average marker density 2 cM in the linkage interval). Marker order was defined by genetic and radiation hybrid techniques.
  
  
  RESULTS
  The maximum single point logarithm of odds (LOD) score was observed for Crohn's disease at D3S3591. Peak multipoint LOD scores of 1.65 and 1.40 for the IBD phenotype were observed near D3S1304 (distal 3p) and near D3S1283 in the linkage region previously reported. Crohn's disease contributed predominantly to the linkage. The transmission disequilibrium test showed significant evidence of association (p=0.009) between allele 4 of D3S1076 and the IBD phenotype (51 transmitted v 28 non-transmitted). Two known polymorphisms in the CCR2 and CCR5 genes were analysed, neither of which showed significant association with IBD. Additional haplotype associations were observed in the vicinity of D3S1076.
  
  
  CONCLUSIONS
  This study provides confirmatory linkage evidence for an IBD susceptibility locus on chromosome 3p and suggests that CCR2 and CCR5 are unlikely to be major susceptibility loci for IBD. The association findings in this region warrant further investigation.
authors.affiliation: Ist Medical Department, Christian-Albrechts- University, Kiel, Germany.
authors.forename: J
authors.initials: J
authors.lastname: Hampe
authors.forename: N J
authors.initials: NJ
authors.lastname: Lynch
authors.forename: S
authors.initials: S
authors.lastname: Daniels
authors.forename: S
authors.initials: S
authors.lastname: Bridger
authors.forename: A J
authors.initials: AJ
authors.lastname: Macpherson
authors.forename: P
authors.initials: P
authors.lastname: Stokkers
authors.forename: A
authors.initials: A
authors.lastname: Forbes
authors.forename: J E
authors.initials: JE
authors.lastname: Lennard-Jones
authors.forename: C G
authors.initials: CG
authors.lastname: Mathew
authors.forename: M E
authors.initials: ME
authors.lastname: Curran
authors.forename: S
authors.initials: S
authors.lastname: Schreiber
mesh_terms: D000483:Alleles; D002874:Chromosome Mapping; D002893:Chromosomes, Human, Pair 3 / Q000235:genetics*; D005260:Female; D005819:Genetic Markers; D006239:Haplotypes; D006801:Humans; D015212:Inflammatory Bowel Diseases / Q000235:genetics*; D008126:Lod Score; D008297:Male; D018895:Microsatellite Repeats; D010641:Phenotype; D011110:Polymorphism, Genetic
chemical_list: D005819:Genetic Markers