title: A p-loop motif and two basic regions in the regulatory protein GvpD are important for the repression of gas vesicle formation in the archaeon Haloferax mediterranei.
abstract: DeltaD transformants containing all 14 gvp genes of Haloferax mediterranei required for gas vesicle formation except for gvpD are gas vesicle overproducers (Vac(++)), whereas DeltaD/D transformants containing the gvpD reading frame under ferredoxin promoter control on a second construct in addition to DeltaD did not form gas vesicles (Vac(-)). The amino acid sequence of GvpD indicates three interesting regions (a putative nucleotide-binding site called the p-loop motif, and two basic regions); these were altered by mutation, and the resulting GvpD(mut) proteins tested in DeltaD/D(mut) transformants for their ability to repress gas vesicle formation. The exchange of amino acids at conserved positions in the p-loop motif resulted in Vac(++) DeltaD/D(mut) transformants, indicating that these GvpD(mut) proteins were unable to repress gas vesicle formation. In contrast, a GvpD(mut) protein with an alteration of a non-conserved proline in the p-loop region (P41A) was still able to repress. The repressing function of the various GvpD proteins was also investigated at the promoter level of the gvpA gene. This promoter is only activated during the stationary phase, depending on the transcriptional activator protein GvpE. Whereas the Vac(++) DeltaD transformants contained very high amounts of gvpA mRNA predominantly in the stationary growth phase, the amount of this transcript was significantly reduced in the Vac(-) transformants DeltaD/D and DeltaD/D(P41A). In contrast, the Vac(++) DeltaD/D(mut) transformants harbouring GvpD(mut) with mutations at conserved positions in the p-loop motif contained large amounts of gvpA mRNA already during exponential growth, suggesting that this motif is important for the GvpD repressor function during this growth phase. The GvpD mutants containing mutations in the two basic regions were mostly defective in the repressing function. The GvpD(mut) protein containing an exchange of the three arginine residues 494RRR496 to alanine residues was able to repress gas vesicle formation. No gvpA mRNA was detectable in this transformant, demonstrating that this GvpD protein was acting as a strong repressor. All these results imply that the GvpD protein is able to prevent the GvpE-mediated gvpA promoter activation, and that the p-loop motif as well as the two basic regions are important for this function.
authors.affiliation: Institut für Mikrobiologie und Genetik, TU Darmstadt, Schnittspahnstr. 10, D-64287 Darmstadt, Germany. pfeifer@bio.tu-darmstadt.de
authors.forename: F
authors.initials: F
authors.lastname: Pfeifer
authors.forename: J
authors.initials: J
authors.lastname: Zotzel
authors.forename: B
authors.initials: B
authors.lastname: Kurenbach
authors.forename: R
authors.initials: R
authors.lastname: Röder
authors.forename: P
authors.initials: P
authors.lastname: Zimmermann
mesh_terms: D020816:Amino Acid Motifs; D019843:Archaeal Proteins; D001425:Bacterial Outer Membrane Proteins / Q000737:chemistry* / Q000378:metabolism; D005740:Gases / Q000378:metabolism; D019848:Gene Expression Regulation, Archaeal; D019623:Haloferax mediterranei / Q000235:genetics / Q000254:growth & development / Q000378:metabolism*; D008565:Membrane Proteins; D008969:Molecular Sequence Data; D016297:Mutagenesis, Site-Directed; D011506:Proteins; D012097:Repressor Proteins / Q000737:chemistry* / Q000378:metabolism; D017422:Sequence Analysis, DNA; D014170:Transformation, Genetic; D014617:Vacuoles / Q000378:metabolism*
chemical_list: D019843:Archaeal Proteins; D001425:Bacterial Outer Membrane Proteins; D005740:Gases; D008565:Membrane Proteins; D011506:Proteins; D012097:Repressor Proteins; C038524:gas vesicle protein