Endogenous type D retrovirus in a marsupial, the common brushtail possum (Trichosurus vulpecula).
We have sequenced and characterized an endogenous type D retrovirus, which we have named TvERV(D), from the genome of an Australian marsupial, the common brushtail possum (Trichosurus vulpecula). Intact TvERV(D) gag, pro, pol, and env open reading frames were detected in the possum genome. TvERV(D) was classified as a type D retrovirus, most closely related to those of Old World monkeys, New World monkeys, and mice, based on phylogenetic analyses and genetic organization. Approximately 30 TvERV(D) proviruses are present in the genomes of possums, as detected by Southern hybridization. However, variability in fragment patterns between possums was observed and suggests recent (or ongoing) retrotranspositional activity.
Baillie
G J
GJ
Biological Sciences Department, University of Waikato, Hamilton, New Zealand. gregb@nme.com
Wilkins
R J
RJ
D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D030121:Betaretrovirus / Q000737:chemistry / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification*; D015139:Blotting, Southern; D003001:Cloning, Molecular; D020077:Endogenous Retroviruses / Q000737:chemistry / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification*; D016679:Genome, Viral; D008394:Marsupialia / Q000821:virology*; D008969:Molecular Sequence Data; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D017422:Sequence Analysis, DNA