GeneSplicer: a new computational method for splice site prediction.
GeneSplicer is a new, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been tested successfully using DNA from two reference organisms: the model plant Arabidopsis thaliana and human. It was compared to six programs representing the leading splice site detectors for each of these species: NetPlantGene, NetGene2, HSPL, NNSplice, GENIO and SpliceView. In each case GeneSplicer performed comparably to the best alternative, in terms of both accuracy and computational efficiency.
Pertea
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The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.
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Salzberg
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D000465:Algorithms; D017398:Alternative Splicing / Q000235:genetics*; D017360:Arabidopsis / Q000235:genetics; D019295:Computational Biology / Q000379:methods*; D004247:DNA / Q000235:genetics; D016208:Databases, Factual; D005796:Genes / Q000235:genetics; D015894:Genome, Human; D018745:Genome, Plant; D006801:Humans
D004247:DNA