A survey of genes in the Atlantic salmon (Salmo salar) as identified by expressed sequence tags.
We describe the construction and quality analysis of six cDNA libraries from the liver, ovary, testis, brain, spleen and muscle tissues of adult Atlantic salmon. The cDNA libraries were then screened with total cDNA probes to catalogue clones representing the abundant and rare mRNA populations in each tissue. Subsequently, the 5'-terminal DNA sequences of 1152 cDNA clones, composed of 96 clones from each of the abundant and rare mRNA populations in the six tissues, were determined. Bioinformatic analysis revealed that 510 (50%) of the salmon expressed sequence tags (ESTs) of sufficient length showed significant homology to previously identified genes from salmonid and other species, while 517 (50%) of salmon ESTs were unidentified or novel. After accounting for multi-EST redundancy, the 510 identified ESTs provided DNA sequence markers for 178 salmon genes which are listed in terms of tissue of origin and mRNA abundance class.
Department of Microbiology, National University of Ireland, Galway, Ireland.
G C
GC
Davey
N C
NC
Caplice
S A
SA
Martin
R
R
Powell
D000818:Animals; D001921:Brain / Q000378:metabolism; D018076:DNA, Complementary / Q000737:chemistry / Q000235:genetics; D020224:Expressed Sequence Tags; D005260:Female; D015723:Gene Library; D005796:Genes / Q000235:genetics*; D008099:Liver / Q000378:metabolism; D008297:Male; D008969:Molecular Sequence Data; D009132:Muscles / Q000378:metabolism; D010053:Ovary / Q000378:metabolism; D012333:RNA, Messenger / Q000235:genetics; D020317:Salmo salar / Q000235:genetics*; D017422:Sequence Analysis, DNA; D013154:Spleen / Q000378:metabolism; D013737:Testis / Q000378:metabolism
D018076:DNA, Complementary; D012333:RNA, Messenger