QSAR study of steroid benchmark and dipeptides based on MEDV-13.
A molecular electronegativity distance vector based on 13 atomic types, called MEDV-13, is a descriptor for predicting the biological activities of molecules based on the quantitative structure-activity relations (QSAR). The MEDV-13 uses a modified electrotopological state (E-state) index to substitute for the relative eletronegativity (q) of non-hydrogen atoms in the molecule of interest in the MEDV and a topological distance for the relative distance (d) in the MEDV. For an organic molecule containing several chemical elements such as C, H, O, N, S, F, Cl, Br, I, and P, the MEDV-13 includes at best 91 descriptors. Then it is essential to employ a principal component regression (PCR) technique to derive a QSAR model relating the biological activities to the MEDV-13. The MEDV-13 is used to study the QSAR of the corticosteroid-binding globulin (CBG) binding affinity of the steroids and the activity inhibiting angiotensin-converting enzyme (ACE) of dipeptides, and resulting models have a comparable quality to the current three-dimensional (3D) methods such as CoMFA though the MEDV-13 is a descriptor based on two-dimensional topological information.
College of Bioengineering, Chongqing University, Chongqing 400044, PR China. ssliu@glite.edu.cn
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D000806:Angiotensin-Converting Enzyme Inhibitors / Q000737:chemistry / Q000494:pharmacology; D003198:Computer Simulation; D016208:Databases, Factual; D004151:Dipeptides / Q000737:chemistry* / Q000494:pharmacology*; D004563:Electrochemistry; D008956:Models, Chemical; D021281:Quantitative Structure-Activity Relationship; D013256:Steroids / Q000737:chemistry* / Q000378:metabolism / Q000494:pharmacology*; D014156:Transcortin / Q000187:drug effects / Q000378:metabolism
D000806:Angiotensin-Converting Enzyme Inhibitors; D004151:Dipeptides; D013256:Steroids; D014156:Transcortin