DNA folding: structural and mechanical properties of the two-angle model for chromatin.
We present a theoretical analysis of the structural and mechanical properties of the 30-nm chromatin fiber. Our study is based on the two-angle model introduced by Woodcock et al. (Woodcock, C. L., S. A. Grigoryev, R. A. Horowitz, and N. Whitaker. 1993. Proc. Natl. Acad. Sci. USA. 90:9021-9025) that describes the chromatin fiber geometry in terms of the entry-exit angle of the nucleosomal DNA and the rotational setting of the neighboring nucleosomes with respect to each other. We analytically explore the different structures that arise from this building principle, and demonstrate that the geometry with the highest density is close to the one found in native chromatin fibers under physiological conditions. On the basis of this model we calculate mechanical properties of the fiber under stretching. We obtain expressions for the stress-strain characteristics that show good agreement with the results of recent stretching experiments (Cui, Y., and C. Bustamante. 2000. Proc. Natl. Acad. Sci. USA. 97:127-132) and computer simulations (Katritch, V., C. Bustamante, and W. K. Olson. 2000. J. Mol. Biol. 295:29-40), and which provide simple physical insights into correlations between the structural and elastic properties of chromatin.
Departments of Physics, University of California, Los Angeles, California 90095, USA. heli@mpip-mainz.mpg.de
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D002843:Chromatin / Q000737:chemistry*; D003198:Computer Simulation; D004247:DNA / Q000737:chemistry*; D006358:Hot Temperature; D007477:Ions; D008954:Models, Biological; D015233:Models, Statistical; D008962:Models, Theoretical; D009690:Nucleic Acid Conformation; D009707:Nucleosomes / Q000737:chemistry
D002843:Chromatin; D007477:Ions; D009707:Nucleosomes; D004247:DNA