title: Novel methylation targets in de novo acute myeloid leukemia with prevalence of chromosome 11 loci.
abstract: Aberrant DNA methylation is believed to be important in tumorigenesis by causing either transcriptional inactivation of genes or chromosomal instability. Several laboratories have identified promoter hypermethylation of tumor suppressor genes in acute myeloid leukemia (AML). However, these studies do not provide a global assessment of overall methylation changes and do not allow the identification of novel methylated sequences. Previously, nonrandom CpG island methylation was reported in 17 adult de novo AML diagnostic samples when compared with the corresponding remission samples by means of restriction landmark genomic scanning (RLGS). That study has been expanded on by an analysis of a larger set of CpG islands (1740 vs 1184), which now provides details of 33 cloned methylated loci, including 21 known genes or expressed sequence tags. Five of these cloned loci appear to be methylated only in AML and not in the 6 solid tumors studied in this study (more than 98 samples analyzed). Chromosomal location was available for 30 of the 33 loci, and 5 of these 30 (17%) are localized to chromosome 11, suggesting a trend toward overrepresentation of methylation events on this chromosome. These results provide evidence for widespread aberrant methylation in AML, with identification of novel methylation targets, epigenetic changes that appear unique to AML, and apparent preferential methylation on chromosome 11.
authors.affiliation: Division of Human Cancer Genetics, Department of Molecular Virology, The Ohio State University, Columbus 43210, USA.
authors.forename: L J
authors.initials: LJ
authors.lastname: Rush
authors.forename: Z
authors.initials: Z
authors.lastname: Dai
authors.forename: D J
authors.initials: DJ
authors.lastname: Smiraglia
authors.forename: X
authors.initials: X
authors.lastname: Gao
authors.forename: F A
authors.initials: FA
authors.lastname: Wright
authors.forename: M
authors.initials: M
authors.lastname: Frühwald
authors.forename: J F
authors.initials: JF
authors.lastname: Costello
authors.forename: W A
authors.initials: WA
authors.lastname: Held
authors.forename: L
authors.initials: L
authors.lastname: Yu
authors.forename: R
authors.initials: R
authors.lastname: Krahe
authors.forename: J E
authors.initials: JE
authors.lastname: Kolitz
authors.forename: C D
authors.initials: CD
authors.lastname: Bloomfield
authors.forename: M A
authors.initials: MA
authors.lastname: Caligiuri
authors.forename: C
authors.initials: C
authors.lastname: Plass
mesh_terms: D000328:Adult; D015139:Blotting, Southern; D002874:Chromosome Mapping; D002880:Chromosomes, Human, Pair 11; D003001:Cloning, Molecular; D019175:DNA Methylation; D015252:Deoxyribonucleases, Type II Site-Specific; D005260:Female; D006801:Humans; D015470:Leukemia, Myeloid, Acute / Q000235:genetics*; D008297:Male; D008875:Middle Aged; D008969:Molecular Sequence Data; D016133:Polymerase Chain Reaction; D012074:Remission Induction; D020133:Reverse Transcriptase Polymerase Chain Reaction; D017422:Sequence Analysis, DNA; D014407:Tumor Cells, Cultured
chemical_list: D015252:Deoxyribonucleases, Type II Site-Specific; C038565:GCGGCCGC-specific type II deoxyribonucleases