Fast protein dynamics probed with infrared vibrational echo experiments.
IR vibrational echo experiments are used to study dynamics in myoglobin (Mb) by investigating the dephasing of the CO-stretching mode of CO bound at the active site of the protein (Mb-CO). The temperature dependence and the viscosity dependence of Mb-CO pure dephasing have been measured in several solvents. In low-temperature, glassy solvents, the pure dephasing has a power law temperature dependence, T(1.3), that reflects glasslike protein dynamics. In liquids, the temperature dependence is much steeper and arises from a combination of pure temperature dependence and the influence of decreasing solvent viscosity with increasing temperature. As the solvent viscosity decreases, the ability of the protein's surface to undergo topological fluctuations increases, which in turn increases the internal protein-structural fluctuations. The protein-structural motions are coupled to the CO bound at the active site by electric field fluctuations that accompany movements of polar residues. The dynamic electric field-coupling mechanism is tested by observing differences in the temperature dependence of the pure dephasing of Mb-CO mutations.
Fayer
M D
MD
Department of Chemistry, Stanford University, Stanford, California 94305, USA. fayer@fayerlab.stanford.edu
D002248:Carbon Monoxide / Q000737:chemistry; D009211:Myoglobin / Q000737:chemistry*; D011487:Protein Conformation; D013055:Spectrophotometry, Infrared; D013816:Thermodynamics; D014732:Vibration
D009211:Myoglobin; D002248:Carbon Monoxide