Structural determinants of MscL gating studied by molecular dynamics simulations.
The mechanosensitive channel of large conductance (MscL) in prokaryotes plays a crucial role in exocytosis as well as in the response to osmotic downshock. The channel can be gated by tension in the membrane bilayer. The determination of functionally important residues in MscL, patch-clamp studies of pressure-conductance relationships, and the recently elucidated crystal structure of MscL from Mycobacterium tuberculosis have guided the search for the mechanism of MscL gating. Here, we present a molecular dynamics study of the MscL protein embedded in a fully hydrated POPC bilayer. Simulations totaling 3 ns in length were carried out under conditions of constant temperature and pressure using periodic boundary conditions and full electrostatics. The protein remained in the closed state corresponding to the crystal structure, as evidenced by its impermeability to water. Analysis of equilibrium fluctuations showed that the protein was least mobile in the narrowest part of the channel. The gating process was investigated through simulations of the bare protein under conditions of constant surface tension. Under a range of conditions, the transmembrane helices flattened as the pore widened. Implications for the gating mechanism in light of these and experimental results are discussed.
Gullingsrud
J
J
Beckman Institute, Department of Physics, University of Illinois, 405 N. Mathews Avenue, Urbana, Illinois 61801, USA.
Kosztin
D
D
Schulten
K
K
D003198:Computer Simulation; D018360:Crystallography, X-Ray; D029968:Escherichia coli Proteins; D006860:Hydrogen Bonding; D007473:Ion Channels / Q000737:chemistry* / Q000378:metabolism*; D008051:Lipid Bilayers / Q000737:chemistry*; D008958:Models, Molecular; D009169:Mycobacterium tuberculosis / Q000737:chemistry; D009995:Osmosis; D018408:Patch-Clamp Techniques; D010713:Phosphatidylcholines / Q000737:chemistry; D011312:Pressure; D011487:Protein Conformation; D017433:Protein Structure, Secondary; D013696:Temperature; D013997:Time Factors
D029968:Escherichia coli Proteins; D007473:Ion Channels; D008051:Lipid Bilayers; C086596:MscL protein, E coli; D010713:Phosphatidylcholines; C028694:1-palmitoyl-2-oleoylphosphatidylcholine