Mechanism of phosphatidylinositol-specific phospholipase C: origin of unusually high nonbridging thio effects.
Phosphatidylinositol-specific phospholipase C (PI-PLC) has been proposed previously to employ a catalytic mechanism highly reminiscent of that of ribonuclease A (RNase A). Both catalytic sites are comprised of two histidine side chains acting as a general base-general acid pair and a phosphate-activating residue: an arginine in the case of PI-PLC and a lysine in RNase A. Despite these structural similarities, the PI-PLC reaction is slowed 10(5)-fold upon substitution of one of the phosphate nonbridging oxygen atoms with sulfur, whereas a much smaller effect is observed in the analogous RNase A reaction. Here, we report a systematic study of this property in PI-PLC, conducted by means of site-directed chemical modification of a cysteine residue replacing the arginine at position 69. The results show that mutant enzymes featuring bidentate side chains at this position display significantly higher activity, higher thio effects, and greater stereoselectivity than do those with monodentate side chains. The results suggest that the bidentate nature of Arg69 is the origin of the large thio effects and stereoselectivity in PI-PLC. We propose that in addition to binding the phosphate, the function of arginine 69 is to bring the phosphate group and the 2-OH group of inositol into proximity and to induce proper alignment for nucleophilic attack, and possibly to lower the pK(a) of the 2-OH. The results presented here could be important to mechanisms of phosphoryl transfer enzymes in general, suggesting that a major part of thio effects observed in enzymatic phosphoryl transfer reactions can originate from factors other than direct interaction between a side chain and a phosphate group, and caution the use of the absolute magnitude of the thio effect as an indicator of the strength of such interactions.
Kravchuk
A V
AV
Departments of Chemistry and Biochemistry, The Ohio State University, Columbus 43210, USA.
Zhao
L
L
Kubiak
R J
RJ
Bruzik
K S
KS
Tsai
M D
MD
D019943:Amino Acid Substitution / Q000235:genetics; D000818:Animals; D001120:Arginine / Q000737:chemistry / Q000235:genetics; D001426:Bacterial Proteins / Q000737:chemistry* / Q000235:genetics; D003545:Cysteine / Q000737:chemistry / Q000235:genetics; D006801:Humans; D008024:Ligands; D008956:Models, Chemical; D016297:Mutagenesis, Site-Directed; D010712:Phosphatidic Acids / Q000737:chemistry; D043265:Phosphatidylinositol Diacylglycerol-Lyase; D010716:Phosphatidylinositols / Q000737:chemistry; D054801:Phosphoinositide Phospholipase C; D051381:Rats; D012259:Ribonuclease, Pancreatic / Q000737:chemistry; D013237:Stereoisomerism; D013329:Structure-Activity Relationship; D013379:Substrate Specificity / Q000235:genetics; D013438:Sulfhydryl Compounds / Q000737:chemistry*; D013873:Thionucleotides / Q000737:chemistry; D010738:Type C Phospholipases / Q000737:chemistry* / Q000235:genetics
D001426:Bacterial Proteins; D008024:Ligands; D010712:Phosphatidic Acids; D010716:Phosphatidylinositols; D013438:Sulfhydryl Compounds; D013873:Thionucleotides; C109946:dimyristoyloxypropanethiophosphoinositol; C050849:1,2-dipalmitoyl glycero-3-thiophosphate; D001120:Arginine; D012259:Ribonuclease, Pancreatic; D010738:Type C Phospholipases; D054801:Phosphoinositide Phospholipase C; D043265:Phosphatidylinositol Diacylglycerol-Lyase; D003545:Cysteine