title: Differential effects of primary human immunodeficiency virus type 1 nef sequences on downregulation of CD4 and MHC class I.
abstract: We analyzed two primary nef sequences, KS2 (subtype B) and K306 (subtype D), each directly isolated from patients. Cell lines constitutively expressing respective Nef proteins were constructed using a retroviral vector. There were significant differences in the ability to downregulate surface CD4 and MHC class I proteins between different nef sequences. When the nef sequence from NL432 was used as a reference, KS2 Nef demonstrated the highest ability to downregulate MHC class I, whereas it appeared to lack the ability to downregulate CD4. On the contrary, Nef from K306 decreased the level of surface CD4 to a greater extent, but was less effective on downregulation of MHC class I. These results showed that the levels of downregulation of CD4 and MHC class I could significantly vary among HIV strains and that two well-known functions of Nef, downregulation of CD4 and MHC class I, would be separated.
authors.affiliation: Institute of Molecular Biology and Genetics, Seoul National University, Seoul 151-742, Korea.
authors.forename: K
authors.initials: K
authors.lastname: Yoon
authors.forename: J G
authors.initials: JG
authors.lastname: Jeong
authors.forename: H
authors.initials: H
authors.lastname: Yoon
authors.forename: J S
authors.initials: JS
authors.lastname: Lee
authors.forename: S
authors.initials: S
authors.lastname: Kim
mesh_terms: D001483:Base Sequence; D015704:CD4 Antigens / Q000378:metabolism*; D002460:Cell Line; D015536:Down-Regulation; D005434:Flow Cytometry; D015754:Genes, nef; D015658:HIV Infections / Q000821:virology; D015497:HIV-1 / Q000235:genetics* / Q000302:isolation & purification; D015395:Histocompatibility Antigens Class I / Q000378:metabolism*; D006801:Humans; D019169:Jurkat Cells; D008297:Male; D008969:Molecular Sequence Data; D012689:Sequence Homology, Nucleic Acid; D013601:T-Lymphocytes / Q000821:virology
chemical_list: D015704:CD4 Antigens; D015395:Histocompatibility Antigens Class I