title: Marker structure and recombination substrate environment influence conversion preference of broken and unbroken alleles in Saccharomyces cerevisiae.
abstract: Double-strand break (DSB)-induced gene conversion was investigated using plasmid x chromosome (P x C) and chromosomal direct-repeat recombination substrates with markers arranged such that functional (selected) products could not arise by longpatch mismatch repair initiated from the DSB. As seen previously with analogous substrates, these substrates yield products with discontinuous conversion tracts, albeit at low frequency. Most conversion tracts were of minimum length, suggesting that heteroduplex DNA (hDNA) is limiting, or that co-repair imposes selective pressure against products with more extensive hDNA. When functional products can arise by long-patch mismatch repair, the broken allele is converted in nearly all products. In contrast, in the absence of long-patch mismatch repair, unbroken alleles are frequently converted, and we show that such conversion depends on both marker structure (i.e., long palindromic vs. nonpalindromic insertions) and the chromosomal environment of the recombination substrate. We propose that conversion of unbroken alleles is largely a consequence of the segregation of unrepaired markers, and that differences in mismatch repair efficiency underlie the observed effects of marker structure and chromosome environment on allele conversion preference.
authors.affiliation: Department of Cancer Biology, Harvard University School of Public Health, Boston, MA 02115, USA.
authors.forename: Y
authors.initials: Y
authors.lastname: Weng
authors.forename: S L
authors.initials: SL
authors.lastname: Barton
authors.forename: J W
authors.initials: JW
authors.lastname: Cho
authors.forename: J A
authors.initials: JA
authors.lastname: Nickoloff
mesh_terms: D000483:Alleles; D020137:Base Pair Mismatch; D004260:DNA Repair; D005819:Genetic Markers; D008957:Models, Genetic; D009154:Mutation; D009692:Nucleic Acid Heteroduplexes; D010957:Plasmids / Q000378:metabolism; D011995:Recombination, Genetic; D012441:Saccharomyces cerevisiae / Q000235:genetics*
chemical_list: D005819:Genetic Markers; D009692:Nucleic Acid Heteroduplexes