title: DNA copy number profiling in esophageal Barrett adenocarcinoma: comparison with gastric adenocarcinoma and esophageal squamous cell carcinoma.
abstract: We screened 18 specimens of Barrett adenocarcinoma for genetic alterations using comparative genomic hybridization (CGH) to analyze DNA copy number changes. The most common gains were at 20q (56%) and 17q (39%). High-level amplifications were observed in the same chromosomes. The most common losses were in chromosomes 4 (22%) and 5 (22%). Other recurrent changes were gains of chromosomes 8, 10q, and 13. We compared the copy number changes in Barrett adenocarcinoma and those previously reported in the intestinal type of stomach carcinoma. The similarities we found suggest a common molecular pathogenesis, whereas dissimilarities seen between Barrett adenocarcinoma and esophageal squamous cell carcinoma are in keeping with a well-known different etiology.
authors.affiliation: Department of Medical Genetics, Haartman Institute and Central Hospital, University of Helsinki, Helsinki, Finland.
authors.forename: A
authors.initials: A
authors.lastname: Varis
authors.forename: P
authors.initials: P
authors.lastname: Puolakkainen
authors.forename: H
authors.initials: H
authors.lastname: Savolainen
authors.forename: A
authors.initials: A
authors.lastname: Kokkola
authors.forename: J
authors.initials: J
authors.lastname: Salo
authors.forename: O
authors.initials: O
authors.lastname: Nieminen
authors.forename: S
authors.initials: S
authors.lastname: Nordling
authors.forename: S
authors.initials: S
authors.lastname: Knuutila
mesh_terms: D000230:Adenocarcinoma / Q000235:genetics*; D000368:Aged; D001471:Barrett Esophagus / Q000235:genetics*; D002294:Carcinoma, Squamous Cell / Q000235:genetics*; D002872:Chromosome Deletion; D002877:Chromosomes, Human; D004273:DNA, Neoplasm / Q000032:analysis*; D004938:Esophageal Neoplasms / Q000235:genetics*; D005260:Female; D005784:Gene Amplification; D018628:Gene Dosage; D006801:Humans; D008297:Male; D008875:Middle Aged; D009693:Nucleic Acid Hybridization; D013274:Stomach Neoplasms
chemical_list: D004273:DNA, Neoplasm