STOCHSIM: modelling of stochastic biomolecular processes.
STOCHSIM is a stochastic simulator for chemical reactions. Molecules are represented as individual software objects that react according to probabilities derived from concentrations and rate constants. Version 1.2 of STOCHSIM provides a novel cross-platform graphical interface written in Perl/Tk. A simple two-dimensional spatial structure has also been implemented, in which nearest-neighbour interactions of molecules in a 2-D lattice can be simulated.
Le Novère
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Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK. nl223@cus.cam.ac.uk
Shimizu
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D000465:Algorithms; D003196:Computer Graphics; D003198:Computer Simulation; D003626:Data Display; D008956:Models, Chemical; D008968:Molecular Conformation; D011506:Proteins / Q000737:chemistry / Q000378:metabolism; D012984:Software; D013269:Stochastic Processes; D014584:User-Computer Interface
D011506:Proteins