title: Genetic diversity and biochemical characteristics of Trichosporon asahii isolated from clinical specimens, houses of patients with summer-type-hypersensitivity pneumonitis, and environmental materials.
abstract: Trichosporon asahii, which is distributed in the environment, is the major causative agent of the opportunistic infection trichosporonosis, and it also causes summer-type hypersensitivity pneumonitis (SHP). Random amplification of polymorphic DNA analysis was used to determine the intraspecies diversity of 39 T. asahii isolates from clinical specimens, SHP patients' houses, and environmental materials. The three primers used revealed 46 polymorphic bands. A phenogram was generated by the unweighted pair-group method with arithmetic mean. Clinical isolates formed a cluster, characterized by a 90% matching coefficient, but they did not cluster with strains isolated from SHP patients' houses or environmental sources. In addition, the biochemical characteristics of 86 strains from three sources were examined with 31 compounds using an ID32C kit, and a phenogram was constructed. The phenogram consisted of three major clusters. Cluster I included most of the clinical SHP isolates, and cluster II included most of the environmental isolates. Cluster III contained only one strain. A remarkable difference was found in the abilities of the strains belonging to clusters I and II to utilize six compounds. These results suggest that the genetic diversity and biochemical characteristics of T. asahii seem to be related to the source of the isolate. We also found a specific DNA fragment for the clinical isolates and strains isolated from SHP patients' houses.
authors: Department of Microbiology, Meiji Pharmaceutical University, 2-522-1 Noshio, Kiyose, Tokyo, 204-8588 Japan. sugita@my-pharm.ac.jp
authors: T
authors: T
authors: Sugita
authors: T
authors: T
authors: Ichikawa
authors: M
authors: M
authors: Matsukura
authors: M
authors: M
authors: Sueda
authors: M
authors: M
authors: Takashima
authors: R
authors: R
authors: Ikeda
authors: A
authors: A
authors: Nishikawa
authors: T
authors: T
authors: Shinoda
mesh_terms: D000542:Alveolitis, Extrinsic Allergic / Q000382:microbiology*; D004271:DNA, Fungal / Q000032:analysis / Q000235:genetics; D004783:Environmental Microbiology; D014644:Genetic Variation / Q000235:genetics*; D006798:Housing; D006801:Humans; D008969:Molecular Sequence Data; D009181:Mycoses / Q000382:microbiology*; D019105:Random Amplified Polymorphic DNA Technique; D017422:Sequence Analysis, DNA; D014250:Trichosporon / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism
chemical_list: D004271:DNA, Fungal