title: A novel mechanism to ensure terminal initiation by hepatitis C virus NS5B polymerase.
abstract: Hepatitis C virus (HCV) nonstructural protein 5B (NS5B) RNA-dependent RNA polymerase (RdRp) has acquired a unique beta-hairpin in the thumb subdomain which protrudes toward the active site. We report here that this beta-hairpin plays an important role in positioning the 3' terminus of the viral RNA genome for correct initiation of replication. The presence of this beta-hairpin interferes with polymerase binding to preannealed double-stranded RNA (dsRNA) molecules and allows only the single-stranded 3' terminus of an RNA template to bind productively to the active site. We propose that this beta-hairpin may serve as a "gate" which prevents the 3' terminus of the template RNA from slipping through the active site and ensures initiation of replication from the terminus of the genome. This hypothesis is supported by the ability of a beta-hairpin deletion mutant that utilizes dsRNA substrates and initiates RNA synthesis internally. The proposed terminal initiation mechanism may represent a novel replication strategy adopted by HCV and related viruses.
authors: ICN Pharmaceuticals, 3300 Hyland Avenue, Costa Mesa, California 92626, USA. zhihong@icnpharm.com
authors: Z
authors: Z
authors: Hong
authors: C E
authors: CE
authors: Cameron
authors: M P
authors: MP
authors: Walker
authors: C
authors: C
authors: Castro
authors: N
authors: N
authors: Yao
authors: J Y
authors: JY
authors: Lau
authors: W
authors: W
authors: Zhong
mesh_terms: D020413:3' Untranslated Regions; D001665:Binding Sites; D016174:Hepacivirus / Q000201:enzymology*; D006526:Hepatitis C / Q000821:virology*; D017354:Point Mutation; D012367:RNA, Viral / Q000096:biosynthesis*; D012324:RNA-Dependent RNA Polymerase / Q000737:chemistry / Q000235:genetics*; D013698:Templates, Genetic; D014158:Transcription, Genetic; D017361:Viral Nonstructural Proteins / Q000737:chemistry / Q000235:genetics*; D014779:Virus Replication
chemical_list: D020413:3' Untranslated Regions; D012367:RNA, Viral; D017361:Viral Nonstructural Proteins; C087036:NS-5 protein, hepatitis C virus; D012324:RNA-Dependent RNA Polymerase