title: Active site characteristics of CYP4B1 probed with aromatic ligands.
abstract: The active site topography of rabbit CYP4B1 has been studied relative to CYP2B1 and CYP102 using a variety of aromatic probe substrates. Oxidation of the prochiral substrate cumene by CYP4B1, but not CYP2B1 or CYP102, resulted in the formation of the thermodynamically disfavored omega-hydroxy metabolite, 2-phenyl-1-propanol, with product stereoselectivity for the (S)-enantiomer. Reaction of CYP4B1, CYP2B1, and CYP102 with phenyldiazene produced spectroscopically observable sigma-complexes for each enzyme. Subsequent oxidation of the CYP2B1 and CYP102 complexes followed by LC/ESI--MS analysis yielded heme pyrrole migration patterns similar to those in previous literature reports. Upon identical treatment, no migration products were detected for CYP4B1. Intramolecular deuterium isotope effects for the benzylic hydroxylation of o-xylene-alpha-(2)H(3), p-xylene-alpha-(2)H(3), 2-(2)H(3),6-dimethylnaphthalene, and 4-(2)H(3),4'-dimethylbiphenyl were determined for CYP4B1 and CYP2B1 to further map their active site dimensions. These probes permit assessment of the ease of equilibration, within P450 active sites, of oxidizable methyl groups located between 3 and 10 A apart [Iyer et al. (1997) Biochemistry 36, 7136--7143]. Isotope effects for the CYP4B1-mediated benzylic hydroxylation of o- and p-xylenes were fully expressed (k(H)/k(D) = 9.7 and 6.8, respectively), whereas deuterium isotope effects for the naphthyl and biphenyl derivatives were both substantially masked (k(H)/k(D) approximately equal to 1). In contrast, significant suppression of the deuterium isotope effects for CYP2B1 occurred only with the biphenyl substrate. Therefore, rapid equilibration between two methyl groups more than 6 A apart is impeded within the active site of CYP4B1, whereas for CYP2B1, equilibration is facile for methyl groups distanced by more than 8 A. Collectively, all data are consistent with the conclusion that the active site of CYP4B1 is considerably restricted relative to CYP2B1.
authors.affiliation: Department of Medicinal Chemistry, School of Pharmacy, University of Washington, Seattle, Washington 98195, USA.
authors.forename: K R
authors.initials: KR
authors.lastname: Henne
authors.forename: M B
authors.initials: MB
authors.lastname: Fisher
authors.forename: K R
authors.initials: KR
authors.lastname: Iyer
authors.forename: D H
authors.initials: DH
authors.lastname: Lang
authors.forename: W F
authors.initials: WF
authors.lastname: Trager
authors.forename: A E
authors.initials: AE
authors.lastname: Rettie
mesh_terms: D000818:Animals; D001189:Aryl Hydrocarbon Hydroxylases; D001555:Benzene Derivatives / Q000378:metabolism*; D001665:Binding Sites; D001713:Biphenyl Compounds / Q000378:metabolism*; D003577:Cytochrome P-450 Enzyme System / Q000378:metabolism*; D003903:Deuterium / Q000378:metabolism; D006900:Hydroxylation; D007097:Imines / Q000378:metabolism*; D007501:Iron; D008024:Ligands; D009281:Naphthalenes / Q000378:metabolism*; D020005:Propanols / Q000378:metabolism; D011817:Rabbits; D013379:Substrate Specificity; D014992:Xylenes / Q000378:metabolism*
chemical_list: D001555:Benzene Derivatives; D001713:Biphenyl Compounds; D007097:Imines; D008024:Ligands; D009281:Naphthalenes; D020005:Propanols; D014992:Xylenes; C017622:2-phenylpropanol-1; C106616:4,4'-dimethylbiphenyl; C028519:2,6-dimethylnaphthalene; C015763:cumene; D003577:Cytochrome P-450 Enzyme System; C011981:phenyldiazene; D003903:Deuterium; D007501:Iron; D001189:Aryl Hydrocarbon Hydroxylases; C095029:cytochrome P-450 CYP4B1