title: Phylogenetic relationships within cation transporter families of Arabidopsis.
abstract: Uptake and translocation of cationic nutrients play essential roles in physiological processes including plant growth, nutrition, signal transduction, and development. Approximately 5% of the Arabidopsis genome appears to encode membrane transport proteins. These proteins are classified in 46 unique families containing approximately 880 members. In addition, several hundred putative transporters have not yet been assigned to families. In this paper, we have analyzed the phylogenetic relationships of over 150 cation transport proteins. This analysis has focused on cation transporter gene families for which initial characterizations have been achieved for individual members, including potassium transporters and channels, sodium transporters, calcium antiporters, cyclic nucleotide-gated channels, cation diffusion facilitator proteins, natural resistance-associated macrophage proteins (NRAMP), and Zn-regulated transporter Fe-regulated transporter-like proteins. Phylogenetic trees of each family define the evolutionary relationships of the members to each other. These families contain numerous members, indicating diverse functions in vivo. Closely related isoforms and separate subfamilies exist within many of these gene families, indicating possible redundancies and specialized functions. To facilitate their further study, the PlantsT database (http://plantst.sdsc.edu) has been created that includes alignments of the analyzed cation transporters and their chromosomal locations.
authors.affiliation: Division of Biology, Cell and Developmental Biology Section and Center for Molecular Genetics, University of California, San Diego, La Jolla, California 92093-0116, USA.
authors.forename: P
authors.initials: P
authors.lastname: Mäser
authors.forename: S
authors.initials: S
authors.lastname: Thomine
authors.forename: J I
authors.initials: JI
authors.lastname: Schroeder
authors.forename: J M
authors.initials: JM
authors.lastname: Ward
authors.forename: K
authors.initials: K
authors.lastname: Hirschi
authors.forename: H
authors.initials: H
authors.lastname: Sze
authors.forename: I N
authors.initials: IN
authors.lastname: Talke
authors.forename: A
authors.initials: A
authors.lastname: Amtmann
authors.forename: F J
authors.initials: FJ
authors.lastname: Maathuis
authors.forename: D
authors.initials: D
authors.lastname: Sanders
authors.forename: J F
authors.initials: JF
authors.lastname: Harper
authors.forename: J
authors.initials: J
authors.lastname: Tchieu
authors.forename: M
authors.initials: M
authors.lastname: Gribskov
authors.forename: M W
authors.initials: MW
authors.lastname: Persans
authors.forename: D E
authors.initials: DE
authors.lastname: Salt
authors.forename: S A
authors.initials: SA
authors.lastname: Kim
authors.forename: M L
authors.initials: ML
authors.lastname: Guerinot
mesh_terms: D017920:Antiporters / Q000145:classification / Q000235:genetics; D017360:Arabidopsis / Q000145:classification / Q000235:genetics*; D001693:Biological Transport, Active; D002352:Carrier Proteins / Q000145:classification / Q000235:genetics* / Q000378:metabolism; D027682:Cation Transport Proteins; D002412:Cations; D002874:Chromosome Mapping; D054815:Cyclic Nucleotide-Gated Cation Channels; D007473:Ion Channels / Q000145:classification / Q000235:genetics*; D017136:Ion Transport / Q000235:genetics; D008565:Membrane Proteins / Q000378:metabolism; D010802:Phylogeny; D011188:Potassium / Q000378:metabolism; D000099173:Natural Resistance-associated Macrophage Protein 1
chemical_list: D017920:Antiporters; D002352:Carrier Proteins; D027682:Cation Transport Proteins; D002412:Cations; D054815:Cyclic Nucleotide-Gated Cation Channels; D007473:Ion Channels; D008565:Membrane Proteins; D011188:Potassium; D000099173:Natural Resistance-associated Macrophage Protein 1