title: Design of a compartmentalized shotgun assembler for the human genome.
abstract: Two different strategies for determining the human genome are currently being pursued: one is the "clone-by-clone" approach, employed by the publicly funded project, and the other is the "whole genome shotgun assembler" approach, favored by researchers at Celera Genomics. An interim strategy employed at Celera, called compartmentalized shotgun assembly, makes use of preliminary data produced by both approaches. In this paper we describe the design, implementation and operation of the "compartmentalized shotgun assembler".
authors.affiliation: Informatics Research, Celera Genomics, 45 West Gude Drive, Rockville 20850, USA.
authors.forename: D H
authors.initials: DH
authors.lastname: Huson
authors.forename: K
authors.initials: K
authors.lastname: Reinert
authors.forename: S A
authors.initials: SA
authors.lastname: Kravitz
authors.forename: K A
authors.initials: KA
authors.lastname: Remington
authors.forename: A L
authors.initials: AL
authors.lastname: Delcher
authors.forename: I M
authors.initials: IM
authors.lastname: Dew
authors.forename: M
authors.initials: M
authors.lastname: Flanigan
authors.forename: A L
authors.initials: AL
authors.lastname: Halpern
authors.forename: Z
authors.initials: Z
authors.lastname: Lai
authors.forename: C M
authors.initials: CM
authors.lastname: Mobarry
authors.forename: G G
authors.initials: GG
authors.lastname: Sutton
authors.forename: E W
authors.initials: EW
authors.lastname: Myers
mesh_terms: D022202:Chromosomes, Artificial, Bacterial / Q000235:genetics; D003001:Cloning, Molecular / Q000379:methods*; D019295:Computational Biology; D030561:Databases, Nucleic Acid; D015894:Genome, Human; D006801:Humans; D017422:Sequence Analysis, DNA / Q000706:statistics & numerical data; D012984:Software