title: DBAli: a database of protein structure alignments.
abstract: CONCLUSIONS
  The DBAli database includes approximately 35000 alignments of pairs of protein structures from SCOP (Lo Conte et al., Nucleic Acids Res., 28, 257-259, 2000) and CE (Shindyalov and Bourne, Protein Eng., 11, 739-747, 1998). DBAli is linked to several resources, including Compare3D (Shindyalov and Bourne, http://www.sdsc.edu/pb/software.htm, 1999) and ModView (Ilyin and Sali, http://guitar.rockefeller.edu/ModView/, 2001) for visualizing sequence alignments and structure superpositions. A flexible search of DBAli by protein sequence and structure properties allows construction of subsets of alignments suitable for a number of applications, such as benchmarking of sequence-sequence and sequence-structure alignment methods under a variety of conditions.
  
  
  BACKGROUND
  http://guitar.rockefeller.edu/DBAli/
authors.affiliation: Laboratories of Molecular Biophysics, Pels Family Center for Biochemistry and Structural Biology, The Rockefeller University, 1230 York Ave, New York, NY 10021, USA.
authors.forename: M A
authors.initials: MA
authors.lastname: Martí-Renom
authors.forename: V A
authors.initials: VA
authors.lastname: Ilyin
authors.forename: A
authors.initials: A
authors.lastname: Sali
mesh_terms: D019295:Computational Biology; D030562:Databases, Protein; D011506:Proteins / Q000737:chemistry* / Q000235:genetics*; D016415:Sequence Alignment / Q000706:statistics & numerical data*; D012984:Software; D012985:Software Design
chemical_list: D011506:Proteins