title: Characterization of the TBX5 binding site and analysis of mutations that cause Holt-Oram syndrome.
abstract: Holt-Oram syndrome is caused by mutations in TBX5, a member of the T-box gene family. In order to identify DNA sequences to which the TBX5 protein binds, we have performed an in vitro binding site selection assay. We have identified an 8 bp core sequence that is part of the Brachyury consensus-binding site. We show that TBX5 binds to the full palindromic Brachyury binding site and to the half-palindrome, whereas Brachyury does not bind to the TBX5 site. Amino acids 1-237 of TBX5 are required for DNA binding. Analysis of the effects of specific substitution mutations that arise in Holt-Oram patients indicates that G80R and R237Q eliminate binding to the target site. DNA database analysis reveals that target sites are present in the upstream regions of several cardiac-expressed genes including cardiac alpha actin, atrial natriuretic factor, cardiac myosin heavy chain alpha, cardiac myosin heavy chain beta, myosin light chain 1A, myosin light chain 1V and Nkx2.5. Cell transfection studies demonstrate that TBX5 activates the transcription of an atrial natriuretic factor reporter construct and this effect is significantly reduced by deletion of the TBX5 binding site.
authors.affiliation: Institute of Genetics, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, UK.
authors.forename: T K
authors.initials: TK
authors.lastname: Ghosh
authors.forename: E A
authors.initials: EA
authors.lastname: Packham
authors.forename: A J
authors.initials: AJ
authors.lastname: Bonser
authors.forename: T E
authors.initials: TE
authors.lastname: Robinson
authors.forename: S J
authors.initials: SJ
authors.lastname: Cross
authors.forename: J D
authors.initials: JD
authors.lastname: Brook
mesh_terms: D000015:Abnormalities, Multiple / Q000235:genetics* / Q000473:pathology; D000818:Animals; D009320:Atrial Natriuretic Factor / Q000235:genetics; D001483:Base Sequence; D001665:Binding Sites / Q000235:genetics; D001667:Binding, Competitive; D019556:COS Cells; D002460:Cell Line; D005326:Fetal Proteins; D005786:Gene Expression Regulation; D017930:Genes, Reporter / Q000235:genetics; D006330:Heart Defects, Congenital / Q000473:pathology*; D006352:Heart Ventricles / Q000196:embryology / Q000378:metabolism; D017403:In Situ Hybridization; D017880:Limb Deformities, Congenital / Q000473:pathology*; D051379:Mice; D008969:Molecular Sequence Data; D009154:Mutation; D020125:Mutation, Missense; D009206:Myocardium / Q000378:metabolism; D009841:Oligonucleotides / Q000235:genetics / Q000378:metabolism; D010957:Plasmids / Q000235:genetics; D011401:Promoter Regions, Genetic / Q000235:genetics; D012689:Sequence Homology, Nucleic Acid; D013577:Syndrome; D020825:T-Box Domain Proteins / Q000235:genetics / Q000378:metabolism*; D000098908:Brachyury Protein
chemical_list: D009320:Atrial Natriuretic Factor; D005326:Fetal Proteins; D009841:Oligonucleotides; D020825:T-Box Domain Proteins; D000098908:Brachyury Protein; C103172:T-box transcription factor 5