title: Novel PKD1 deletions and missense variants in a cohort of Hellenic polycystic kidney disease families.
abstract: The autosomal dominant form of polycystic kidney disease is a very frequent genetically heterogeneous inherited condition affecting approximately 1 : 1000 individuals of the Caucasian population. The main symptom is the formation of fluid-filled cysts in the kidneys, which grow progressively in size and number with age, and leading to end-stage renal failure in approximately 50% of patients by age 60. About 85% of cases are caused by mutations in the PKD1 gene on chromosome 16p13.3, which encodes for polycystin-1, a membranous glycoprotein with 4302 amino acids and multiple domains. Mutation detection is still a challenge owing to various sequence characteristics that prevent easy PCR amplification and sequencing. Here we attempted a systematic screening of part of the duplicated region of the gene in a large cohort of 53 Hellenic families with the use of single-strand conformation polymorphism analysis of exons 16-34. Our analysis revealed eight most probably disease causing mutations, five deletions and three single amino acid substitutions, in the REJ domain of the protein. In one family, a 3-bp and an 8-bp deletion in exons 20 and 21 respectively, were co-inherited on the same PKD1 chromosome, causing disease in the mother and three sons. Interestingly we did not find any termination codon defects, so common in the unique part of the PKD1 gene. In the same cohort we identified 11 polymorphic sequence variants, four of which resulted in amino acid variations. This supports the notion that the PKD1 gene may be prone to mutagenesis, justifying the relatively high prevalence of polycystic kidney disease.
authors.affiliation: The Cyprus Institute of Neurology and Genetics, Department of Molecular Genetics, Nicosia, Cyprus.
authors.forename: I
authors.initials: I
authors.lastname: Bouba
authors.forename: M
authors.initials: M
authors.lastname: Koptides
authors.forename: R
authors.initials: R
authors.lastname: Mean
authors.forename: C E
authors.initials: CE
authors.lastname: Costi
authors.forename: K
authors.initials: K
authors.lastname: Demetriou
authors.forename: I
authors.initials: I
authors.lastname: Georgiou
authors.forename: A
authors.initials: A
authors.lastname: Pierides
authors.forename: K
authors.initials: K
authors.lastname: Siamopoulos
authors.forename: C C
authors.initials: CC
authors.lastname: Deltas
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D015331:Cohort Studies; D004247:DNA / Q000737:chemistry / Q000235:genetics; D004252:DNA Mutational Analysis; D005192:Family Health; D005260:Female; D014644:Genetic Variation; D006801:Humans; D008297:Male; D020125:Mutation, Missense; D010375:Pedigree; D016891:Polycystic Kidney, Autosomal Dominant / Q000235:genetics*; D011110:Polymorphism, Genetic; D018807:Polymorphism, Single-Stranded Conformational; D011506:Proteins / Q000235:genetics*; D017384:Sequence Deletion; D017386:Sequence Homology, Amino Acid; D012689:Sequence Homology, Nucleic Acid; D050396:TRPP Cation Channels
chemical_list: D004247:DNA; D011506:Proteins; D050396:TRPP Cation Channels