Molecular typing of echovirus serotype 4 isolates.
We report on clinical samples Stuttgart/97, Berlin/99 and Jasi/99 associated with aseptic meningitis. All three samples contained echovirus 4 (E4) but Stuttgart/97 was simultaneous infected with echovirus 30 (E30). The genetic relationship of the E4 strains was assessed using RT-PCR and direct sequencing of amplicons derived from the genomic region encoding the capsid protein VP1. The sequences have been compared with each other and with sequences of further E4 strains obtained from GenBank. The analysis confirms that sequences of recent isolates have drifted away from elderly strains over a longer period of time. Several amino acid changes in assumed antigenic sites of the VP1 gene may be sufficient to cause changes in antigenic specificity and therefore they may be a reason for failure of serological typing of some new antigenic E4 variants.
Künkel
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U
Robert Koch-Institut, Berlin, Nordufer 20, D-13353, Berlin, Germany.
Diedrich
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S
Schreier
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E
D000595:Amino Acid Sequence; D002213:Capsid / Q000235:genetics; D029822:Enterovirus B, Human / Q000145:classification* / Q000235:genetics; D004769:Enterovirus Infections / Q000821:virology; D005787:Gene Frequency; D005814:Genes, Viral; D006801:Humans; D008582:Meningitis, Aseptic / Q000821:virology; D008969:Molecular Sequence Data; D010802:Phylogeny; D016415:Sequence Alignment