title: Generation of stable mRNA fragments and translation of N-truncated proteins induced by antisense oligodeoxynucleotides.
abstract: Binding of phosphorothioate-modified antisense oligodeoxynucleotides (AS ODNs) to target mRNAs is commonly thought to mediate RNA degradation or block of translation. Here we demonstrate cleavage of target mRNAs within the AS ODN binding region with subsequent degradation of the 5' but not the 3' cleavage product. Some, if not all, 3' mRNA fragments lacked a 5' cap structure, whereas their poly(A) tail length remained unchanged. Furthermore, they were efficiently translated into N-terminally truncated proteins as demonstrated in three settings: production of shortened hepadnaviral surface proteins, alteration of the subcellular localization of a fluorescent protein, and shift of the transcription factor C/EBPalpha isoform expression levels. Thus, AS treatment may result in the synthesis of N-truncated proteins with biologically relevant effects.
authors.affiliation: Department of Medicine II, University of Freiburg, Hugstetter Strasse 55, D-79106 Freiburg, Germany.
authors.forename: C
authors.initials: C
authors.lastname: Thoma
authors.forename: P
authors.initials: P
authors.lastname: Hasselblatt
authors.forename: J
authors.initials: J
authors.lastname: Köck
authors.forename: S F
authors.initials: SF
authors.lastname: Chang
authors.forename: B
authors.initials: B
authors.lastname: Hockenjos
authors.forename: H
authors.initials: H
authors.lastname: Will
authors.forename: M W
authors.initials: MW
authors.lastname: Hentze
authors.forename: H E
authors.initials: HE
authors.lastname: Blum
authors.forename: F
authors.initials: F
authors.lastname: von Weizsäcker
authors.forename: W B
authors.initials: WB
authors.lastname: Offensperger
mesh_terms: D000818:Animals; D022763:CCAAT-Enhancer-Binding Protein-alpha / Q000378:metabolism; D008856:Microscopy, Fluorescence; D020319:Oligodeoxyribonucleotides, Antisense / Q000737:chemistry / Q000378:metabolism*; D010446:Peptide Fragments / Q000235:genetics / Q000378:metabolism*; D020033:Protein Isoforms / Q000378:metabolism; D011498:Protein Precursors / Q000378:metabolism; D012315:RNA Caps / Q000378:metabolism; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism*; D014407:Tumor Cells, Cultured
chemical_list: D022763:CCAAT-Enhancer-Binding Protein-alpha; D020319:Oligodeoxyribonucleotides, Antisense; D010446:Peptide Fragments; D020033:Protein Isoforms; D011498:Protein Precursors; D012315:RNA Caps; D012333:RNA, Messenger