title: Genomic characterization of LIGHT reveals linkage to an immune response locus on chromosome 19p13.3 and distinct isoforms generated by alternate splicing or proteolysis.
abstract: LIGHT is a member of the TNF cytokine superfamily that signals through the lymphotoxin (LT)beta receptor and the herpesvirus entry mediator. LIGHT may function as a costimulatory factor for the activation of lymphoid cells and as a deterrent to infection by herpesvirus, which may provide significant selective pressure shaping the evolution of LIGHT. Here, we define the molecular genetics of the human LIGHT locus, revealing its close linkage to the TNF superfamily members CD27 ligand and 4-1BB ligand, and the third complement protein (C3), which positions LIGHT within the MHC paralog on chromosome 19p13.3. An alternately spliced isoform of LIGHT mRNA that encodes a transmembrane-deleted form is detected in activated T cells and gives rise to a nonglycosylated protein that resides in the cytosol. Furthermore, membrane LIGHT is shed from the cell surface of human 293 T cells. These studies reveal new mechanisms involved in regulating the physical forms and cellular compartmentalization of LIGHT that may contribute to the regulation and biological function of this cytokine.
authors.affiliation: Division of Molecular Immunology, La Jolla Institute for Allergy and Immunology, San Diego, CA 92121, USA.
authors.forename: S W
authors.initials: SW
authors.lastname: Granger
authors.forename: K D
authors.initials: KD
authors.lastname: Butrovich
authors.forename: P
authors.initials: P
authors.lastname: Houshmand
authors.forename: W R
authors.initials: WR
authors.lastname: Edwards
authors.forename: C F
authors.initials: CF
authors.lastname: Ware
mesh_terms: D053330:4-1BB Ligand; D017398:Alternative Splicing; D000595:Amino Acid Sequence; D015703:Antigens, CD; D053282:CD27 Ligand; D002874:Chromosome Mapping; D002899:Chromosomes, Human, Pair 9; D008040:Genetic Linkage; D006801:Humans; D008565:Membrane Proteins / Q000737:chemistry / Q000235:genetics*; D008969:Molecular Sequence Data; D020033:Protein Isoforms; D053326:Tumor Necrosis Factor Ligand Superfamily Member 14; D014409:Tumor Necrosis Factor-alpha / Q000737:chemistry / Q000235:genetics*
chemical_list: D053330:4-1BB Ligand; D015703:Antigens, CD; D053282:CD27 Ligand; C505771:CD70 protein, human; D008565:Membrane Proteins; D020033:Protein Isoforms; C505914:TNFSF14 protein, human; C505974:TNFSF9 protein, human; D053326:Tumor Necrosis Factor Ligand Superfamily Member 14; D014409:Tumor Necrosis Factor-alpha