title: Determination of Lewis FUT3 gene mutations by PCR using sequence-specific primers enables efficient genotyping of clinical samples.
abstract: We have developed a polymerase chain reaction method using sequence-specific primers (PCR-SSP) for rapid and correct genotyping of the common Lewis (FUT3) gene mutations 59T>G, 202T>C, 314C>T, 508G>A, and 1067T>A. The PCR-SSP method was validated on 20 healthy blood donors and 16 non-insulin-dependent diabetic patients. All individuals were in parallel genotyped by our established polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis. The FUT3 genotypes, determined with the PCR-SSP method, were in complete accordance with the results of the PCR-RFLP reference method. The PCR-SSP method could also be adapted to assign the presence of a specific mutation to the respective FUT3 alleles. We found the method to be reliable, rapid and cheap with no requirements for restriction enzyme processing.
authors.affiliation: Institute of Laboratory Medicine, Department of Clinical Chemistry and Transfusion Medicine, Sahlgrenska University Hospital, SE-413 45 Göteborg, Sweden.
authors.forename: A
authors.initials: A
authors.lastname: Grahn
authors.forename: A
authors.initials: A
authors.lastname: Elmgren
authors.forename: L
authors.initials: L
authors.lastname: Aberg
authors.forename: L
authors.initials: L
authors.lastname: Svensson
authors.forename: P A
authors.initials: PA
authors.lastname: Jansson
authors.forename: P
authors.initials: P
authors.lastname: Lönnroth
authors.forename: G
authors.initials: G
authors.lastname: Larson
mesh_terms: D000483:Alleles; D004252:DNA Mutational Analysis / Q000379:methods; D017931:DNA Primers / Q000235:genetics*; D003924:Diabetes Mellitus, Type 2 / Q000201:enzymology / Q000235:genetics; D005647:Fucosyltransferases / Q000235:genetics*; D005820:Genetic Testing / Q000379:methods*; D005838:Genotype; D006386:Hemagglutination Tests; D006801:Humans; D009154:Mutation / Q000235:genetics*; D016133:Polymerase Chain Reaction / Q000379:methods*; D012150:Polymorphism, Restriction Fragment Length; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity; D013379:Substrate Specificity; D013997:Time Factors; D000097631:Galactoside 2-alpha-L-fucosyltransferase
chemical_list: D017931:DNA Primers; D005647:Fucosyltransferases; D000097631:Galactoside 2-alpha-L-fucosyltransferase; C019818:3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase