Prediction of many new exons and introns in Plasmodium falciparum chromosome 2.
The current prediction of genes in the Plasmodium falciparum genome database relies upon a limited number of specially developed computer algorithms. We have re-annotated the sequence of chromosome 2 of P. falciparum by a computer-assisted manual analysis, which is described here. Of 161 newly predicted introns, we have experimentally confirmed 98. We regard 110 introns from the previously published analyses as probable, we delete 3, change 26 and add 135. We recognise 214 genes in chromosome 2. We have predicted introns in 121 genes. The increased complexity of gene structure on chromosome 2 is likely to be mirrored by the entire genome.
Huestis
R
R
Microbiology Department and the Victorian Bioinformatics Consortium, Monash University, Clayton, Vic. 3800, Australia. robert.huestis@med.monash.edu.au
Fischer
K
K
D000465:Algorithms; D000818:Animals; D000953:Antigens, Protozoan / Q000235:genetics; D001483:Base Sequence; D002875:Chromosomes / Q000235:genetics*; D019295:Computational Biology / Q000379:methods*; D005091:Exons / Q000235:genetics*; D017125:Genes, Protozoan; D007438:Introns / Q000235:genetics*; D008969:Molecular Sequence Data; D010963:Plasmodium falciparum / Q000235:genetics*; D015800:Protozoan Proteins / Q000235:genetics / Q000378:metabolism; D022821:RNA Splice Sites; D016415:Sequence Alignment
D000953:Antigens, Protozoan; D015800:Protozoan Proteins; D022821:RNA Splice Sites; C057495:serine repeat antigen, Plasmodium