title: Analysis of biofilm structure and gene expression using fluorescence dual labeling.
abstract: The use of biofilms for the degradation of recalcitrant environmental contaminants or for the production of secondary metabolites necessitates understanding and controlling gene expression. In this work, dual labeling with green fluorescent protein (GFP) variants was used to investigate inducible gene expression in a biofilm. Colocalization of GFP emissions was used to determine regions of attached cells and to correlate structure and activity within the biofilm. The labeling strategy reported here is unique in that the two GFP signals were distinguished by differential excitation rather than differential emission.
authors.affiliation: Department of Chemical Engineering, University of California, Berkeley, California 94720, USA.
authors.forename: E S
authors.initials: ES
authors.lastname: Gilbert
authors.forename: A
authors.initials: A
authors.lastname: Khlebnikov
authors.forename: S E
authors.initials: SE
authors.lastname: Cowan
authors.forename: J D
authors.initials: JD
authors.lastname: Keasling
mesh_terms: D018441:Biofilms; D004926:Escherichia coli / Q000235:genetics* / Q000378:metabolism / Q000648:ultrastructure; D005456:Fluorescent Dyes; D020869:Gene Expression Profiling / Q000379:methods; D015964:Gene Expression Regulation, Bacterial / Q000235:genetics*; D049452:Green Fluorescent Proteins; D008164:Luminescent Proteins / Q000096:biosynthesis / Q000235:genetics
chemical_list: D005456:Fluorescent Dyes; D008164:Luminescent Proteins; D049452:Green Fluorescent Proteins