title: Comparison of pulsed-field gel electrophoresis and amplified fragment-length polymorphism for epidemiological investigations of common nosocomial pathogens.
abstract: OBJECTIVE
  To compare molecular typing by amplified fragment-length polymorphism (AFLP) analysis with pulsed-field gel electrophoresis (PFGE) with respect to the ability to differentiate between epidemiologically related and unrelated isolates of common nosocomial pathogens recovered during a period of endemicity.
  
  
  METHODS
  Retrospective laboratory analysis.
  
  
  METHODS
  Tertiary-care institution.
  
  
  METHODS
  17 isolates of Acinetobacter baumannii, 22 isolates of Pseudomonas aeruginosa, and 22 vancomycin-resistant Enterococcusfaecium (VRE) were typed by both methods.
  
  
  RESULTS
  AFLP generated comparable results to PFGE for A baumannii and P aeruginosa isolates; both methods identified epidemiologically related and unrelated isolates. However, strain typing of VRE isolates produced discordant results between the two methods. PFGE identified 10 different strain types and differentiated between all epidemiologically related and unrelated isolates. In contrast, AFLP generated only five different strain types, three of which contained both epidemiologically related and unrelated isolates.
  
  
  CONCLUSIONS
  Molecular typing by AFLP is comparable to PFGE for A baumannii and P aeruginosa isolates. For VRE isolates, however, PFGE remains the method of choice.
authors.affiliation: Division of Infectious Diseases, Vanderbilt University, Nashville, Tennessee, USA.
authors.forename: E M
authors.initials: EM
authors.lastname: D'Agata
authors.forename: M M
authors.initials: MM
authors.lastname: Gerrits
authors.forename: Y W
authors.initials: YW
authors.lastname: Tang
authors.forename: M
authors.initials: M
authors.lastname: Samore
authors.forename: J G
authors.initials: JG
authors.lastname: Kusters
mesh_terms: D000150:Acinetobacter / Q000235:genetics / Q000302:isolation & purification*; D001483:Base Sequence; D003428:Cross Infection / Q000453:epidemiology / Q000382:microbiology*; D017931:DNA Primers; D016521:Electrophoresis, Gel, Pulsed-Field / Q000379:methods*; D016984:Enterococcus faecium / Q000235:genetics / Q000302:isolation & purification*; D006801:Humans; D012150:Polymorphism, Restriction Fragment Length; D011550:Pseudomonas aeruginosa / Q000235:genetics / Q000302:isolation & purification*; D020713:Vancomycin Resistance
chemical_list: D017931:DNA Primers