title: Extended form of a retro-inverso peptide stabilized by beta-sheet unidirectional H-bonds: Crystallographic and NMR evidence.
abstract: The crystallographic investigation of the retro-inverso peptide Bz-S-gAla-R-mAla-NHPh reveals an extended backbone conformation where the NH groups of the gem-diamino alkyl moiety and the CO groups of the malonyl residue face side by side. This extended conformation, presenting all carbonyls on opposite sides of the NH groups, is stabilized by interstrand H-bonds running in a single direction of the parallel beta-sheets that characterize the crystal packing. These sheets differ from the beta-sheets formed by native amino acids only. (1)H-NMR nuclear Overhauser effect spectroscopy (NOESY) experiments suggest that a conformation similar to that found in the crystal also prevails in dimethylsulfoxide solution. Previous potential energy calculations of gem-diamino alkyl (g) and malonyl (m) Ala residues predicted that extended forms were less stable than the helical ones because of strong electrostatic repulsions between the parallel polar groups. Similar arguments were invoked to give more weight to helical forms of the retro-peptide units in the proposal of packing models of some nylons in their crystalline polar regions. The present findings show that both g and m Ala residues can experience the extended conformation in the beta-sheet aggregation. The energy increase occurring in one strand, due to the parallel orientation of consecutive peptide dipoles, is more than compensated by favorable cooperative interactions among head-to-tail aligned peptide dipoles of facing strands, resulting in the formation of two C==O...H==N H-bonds per residue.
authors.affiliation: Dipartimento Farmaco-Chimico, Universitá degli Studi, V. E. Orabona 4, 70125 Bari, Italy.
authors.forename: A
authors.initials: A
authors.lastname: Carotti
authors.forename: A
authors.initials: A
authors.lastname: Carrieri
authors.forename: S
authors.initials: S
authors.lastname: Cellamare
authors.forename: F P
authors.initials: FP
authors.lastname: Fanizzi
authors.forename: E
authors.initials: E
authors.lastname: Gavuzzo
authors.forename: F
authors.initials: F
authors.lastname: Mazza
mesh_terms: D000409:Alanine / Q000737:chemistry; D018360:Crystallography, X-Ray; D004121:Dimethyl Sulfoxide / Q000494:pharmacology; D006860:Hydrogen Bonding; D009682:Magnetic Resonance Spectroscopy; D008764:Methylmalonic Acid / Q000737:chemistry; D008956:Models, Chemical; D010452:Peptide Biosynthesis; D010455:Peptides / Q000138:chemical synthesis* / Q000737:chemistry*; D011487:Protein Conformation; D017433:Protein Structure, Secondary
chemical_list: D010455:Peptides; D008764:Methylmalonic Acid; D000409:Alanine; D004121:Dimethyl Sulfoxide