Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome.
Williams syndrome is a complex developmental disorder that results from the heterozygous deletion of a approximately 1.6-Mb segment of human chromosome 7q11.23. These deletions are mediated by large (approximately 300 kb) duplicated blocks of DNA of near-identical sequence. Previously, we showed that the orthologous region of the mouse genome is devoid of such duplicated segments. Here, we extend our studies to include the generation of approximately 3.3 Mb of genomic sequence from the mouse Williams syndrome region, of which just over 1.4 Mb is finished to high accuracy. Comparative analyses of the mouse and human sequences within and immediately flanking the interval commonly deleted in Williams syndrome have facilitated the identification of nine previously unreported genes, provided detailed sequence-based information regarding 30 genes residing in the region, and revealed a number of potentially interesting conserved noncoding sequences. Finally, to facilitate comparative sequence analysis, we implemented several enhancements to the program, including the addition of links from annotated features within a generated percent-identity plot to specific records in public databases. Taken together, the results reported here provide an important comparative sequence resource that should catalyze additional studies of Williams syndrome, including those that aim to characterize genes within the commonly deleted interval and to develop mouse models of the disorder.
DeSilva
Udaya
U
Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Elnitski
Laura
L
Idol
Jacquelyn R
JR
Doyle
Johannah L
JL
Gan
Weiniu
W
Thomas
James W
JW
Schwartz
Scott
S
Dietrich
Nicole L
NL
Beckstrom-Sternberg
Stephen M
SM
McDowell
Jennifer C
JC
Blakesley
Robert W
RW
Bouffard
Gerard G
GG
Thomas
Pamela J
PJ
Touchman
Jeffrey W
JW
Miller
Webb
W
Green
Eric D
ED
D000818:Animals; D001482:Base Composition; D002897:Chromosomes, Human, Pair 7 / Q000235:genetics*; D017124:Conserved Sequence / Q000235:genetics; D006801:Humans; D051379:Mice; D008969:Molecular Sequence Data; D020161:Physical Chromosome Mapping; D017422:Sequence Analysis, DNA / Q000379:methods*; D012689:Sequence Homology, Nucleic Acid; D018980:Williams Syndrome / Q000235:genetics*