title: Phylogenetic identification and substrate uptake patterns of sulfate-reducing bacteria inhabiting an oxic-anoxic sewer biofilm determined by combining microautoradiography and fluorescent in situ hybridization.
abstract: We simultaneously determined the phylogenetic identification and substrate uptake patterns of sulfate-reducing bacteria (SRB) inhabiting a sewer biofilm with oxygen, nitrate, or sulfate as an electron acceptor by combining microautoradiography and fluorescent in situ hybridization (MAR-FISH) with family- and genus-specific 16S rRNA probes. The MAR-FISH analysis revealed that Desulfobulbus hybridized with probe 660 was a dominant SRB subgroup in this sewer biofilm, accounting for 23% of the total SRB. Approximately 9 and 27% of Desulfobulbus cells detected with probe 660 could take up [(14)C]propionate with oxygen and nitrate, respectively, as an electron acceptor, which might explain the high abundance of this species in various oxic environments. Furthermore, more than 40% of Desulfobulbus cells incorporated acetate under anoxic conditions. SRB were also numerically important members of H(2)-utilizing and (14)CO(2)-fixing microbial populations in this sewer biofilm, accounting for roughly 42% of total H(2)-utilizing bacteria hybridized with probe EUB338. A comparative 16S ribosomal DNA analysis revealed that two SRB populations, related to the Desulfomicrobium hypogeium and the Desulfovibrio desulfuricans MB lineages, were found to be important H(2) utilizers in this biofilm. The substrate uptake characteristics of different phylogenetic SRB subgroups were compared with the characteristics described to date. These results provide further insight into the correlation between the 16S rRNA phylogenetic diversity and the physiological diversity of SRB populations inhabiting sewer biofilms.
authors.affiliation: Department of Urban and Environmental Engineering, Graduate School of Engineering, Hokkaido University, 060-8628, Sapporo, Japan.
authors.forename: Tsukasa
authors.initials: T
authors.lastname: Ito
authors.forename: Jeppe L
authors.initials: JL
authors.lastname: Nielsen
authors.forename: Satoshi
authors.initials: S
authors.lastname: Okabe
authors.forename: Yoshimasa
authors.initials: Y
authors.lastname: Watanabe
authors.forename: Per H
authors.initials: PH
authors.lastname: Nielsen
mesh_terms: D000332:Aerobiosis; D000693:Anaerobiosis; D001345:Autoradiography; D018441:Biofilms / Q000254:growth & development; D004275:DNA, Ribosomal / Q000032:analysis; D020564:Deltaproteobacteria / Q000145:classification / Q000235:genetics / Q000378:metabolism; D017404:In Situ Hybridization, Fluorescence; D008969:Molecular Sequence Data; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D012722:Sewage / Q000382:microbiology*; D013431:Sulfates / Q000378:metabolism; D016999:Sulfur-Reducing Bacteria / Q000145:classification* / Q000235:genetics* / Q000378:metabolism
chemical_list: D004275:DNA, Ribosomal; D012336:RNA, Ribosomal, 16S; D012722:Sewage; D013431:Sulfates