title: Three hundred twenty-six genetic variations in genes encoding nine members of ATP-binding cassette, subfamily B (ABCB/MDR/TAP), in the Japanese population.
abstract: We screened DNAs from 48 Japanese individuals for single-nucleotide polymorphisms (SNPs) in nine genes encoding components of ATP-binding cassette subfamily B (ABCB/MDR/TAP) by directly sequencing the entire applicable genomic regions except for repetitive elements. This approach identified 297 SNPs and 29 insertion/deletion polymorphisms among the nine genes. Of the 297 SNPs, 50 were identified in the ABCB1 gene, 14 in TAP], 35 in TAP2, 48 in ABCB4, 13 in ABCB7, 21 in ABCB8, 21 in ABCB9, 13 in ABCB10, and 82 in ABCB11. Thirteen were located in 5' flanking regions, 237 in introns, 37 in exons, and 10 in 3' flanking regions. These variants may contribute to investigations of possible correlations between genotypes and disease-susceptibility phenotypes or responsiveness to drug therapy.
authors.affiliation: Laboratory for Genotyping, SNP Research Center, Institute of Physical and Chemical Research, Tokyo, Japan.
authors.forename: Susumu
authors.initials: S
authors.lastname: Saito
authors.forename: Aritoshi
authors.initials: A
authors.lastname: Iida
authors.forename: Akihiro
authors.initials: A
authors.lastname: Sekine
authors.forename: Yukie
authors.initials: Y
authors.lastname: Miura
authors.forename: Chie
authors.initials: C
authors.lastname: Ogawa
authors.forename: Saori
authors.initials: S
authors.lastname: Kawauchi
authors.forename: Shoko
authors.initials: S
authors.lastname: Higuchi
authors.forename: Yusuke
authors.initials: Y
authors.lastname: Nakamura
mesh_terms: D018435:ATP Binding Cassette Transporter, Subfamily B / Q000235:genetics* / Q000378:metabolism; D020168:ATP Binding Cassette Transporter, Subfamily B, Member 1 / Q000235:genetics; D000071181:ATP Binding Cassette Transporter, Subfamily B, Member 2; D018528:ATP-Binding Cassette Transporters / Q000235:genetics; D004247:DNA / Q000378:metabolism; D005091:Exons; D019450:Genes, MDR / Q000235:genetics; D014644:Genetic Variation; D006801:Humans; D007438:Introns; D007564:Japan / Q000453:epidemiology; D007962:Leukocytes; D008285:Major Histocompatibility Complex / Q000235:genetics; D016133:Polymerase Chain Reaction; D011110:Polymorphism, Genetic / Q000235:genetics*; D011401:Promoter Regions, Genetic
chemical_list: D018435:ATP Binding Cassette Transporter, Subfamily B; D020168:ATP Binding Cassette Transporter, Subfamily B, Member 1; D000071181:ATP Binding Cassette Transporter, Subfamily B, Member 2; D018528:ATP-Binding Cassette Transporters; C073119:TAP1 protein, human; D004247:DNA