title: Cryptic plasmids of Mycobacterium avium: Tn552 to the rescue.
abstract: Plasmids have been described in almost all bacterial species analysed and have proven to be essential genetic tools. In many bacteria these extrachromosomal DNAs are cryptic with no known markers or function, which makes their characterization and genetic exploitation extremely difficult. Here we describe a system that will allow the rescue of any circular DNA (plasmid or phage) using an in vitro transposition system to deliver both a selectable marker (kanamycin) and an Escherichia coli plasmid origin of replication. In this study, we demonstrate the rescue of four cryptic plasmids from the opportunistic pathogen Mycobacterium avium. To evaluate the host range of the rescued plasmids, we have examined their ability to be propagated in Mycobacterium smegmatis and Mycobacterium bovis BCG, and their compatibility with other mycobacterial plasmids. In addition, we use a library of transposon insertions to sequence one plasmid, pVT2, and to begin a genetic analysis of plasmid genes. Using this approach, we identified a putative conjugative relaxase, suggesting this myco-bacterial plasmid is transferable, and three genes required for plasmid establishment and replication.
authors.affiliation: Department of Biomedical Sciences, State University of New York at Albany, NY, USA.
authors.forename: Carolyn
authors.initials: C
authors.lastname: Kirby
authors.forename: Al
authors.initials: A
authors.lastname: Waring
authors.forename: Thomas J
authors.initials: TJ
authors.lastname: Griffin
authors.forename: Joseph O
authors.initials: JO
authors.lastname: Falkinham
authors.forename: Nigel D F
authors.initials: ND
authors.lastname: Grindley
authors.forename: Keith M
authors.initials: KM
authors.lastname: Derbyshire
mesh_terms: D001483:Base Sequence; D015139:Blotting, Southern; D004251:DNA Transposable Elements; D004269:DNA, Bacterial; D004270:DNA, Circular; D008969:Molecular Sequence Data; D016254:Mutagenesis, Insertional; D009162:Mycobacterium avium / Q000235:genetics*; D009163:Mycobacterium bovis / Q000235:genetics; D020102:Mycobacterium smegmatis / Q000235:genetics; D010957:Plasmids; D018741:Replication Origin; D015183:Restriction Mapping; D017422:Sequence Analysis, DNA; D012689:Sequence Homology, Nucleic Acid
chemical_list: D004251:DNA Transposable Elements; D004269:DNA, Bacterial; D004270:DNA, Circular