title: A structural model for the catalytic cycle of Ca(2+)-ATPase.
abstract: Ca(2+)-ATPase is responsible for active transport of calcium ions across the sarcoplasmic reticulum membrane. This coupling involves an ordered sequence of reversible reactions occurring alternately at the ATP site within the cytoplasmic domains, or at the calcium transport sites within the transmembrane domain. These two sites are separated by a large distance and conformational changes have long been postulated to play an important role in their coordination. To characterize the nature of these conformational changes, we have built atomic models for two reaction intermediates and postulated the mechanisms governing the large structural changes. One model is based on fitting the X-ray crystallographic structure of Ca(2+)-ATPase in the E1 state to a new 6 A structure by cryoelectron microscopy in the E2 state. This fit indicates that calcium binding induces enormous movements of all three cytoplasmic domains as well as significant changes in several transmembrane helices. We found that fluorescein isothiocyanate displaced a decavanadate molecule normally located at the intersection of the three cytoplasmic domains, but did not affect their juxtaposition; this result indicates that our model likely reflects a native E2 conformation and not an artifact of decavanadate binding. To explain the dramatic structural effect of calcium binding, we propose that M4 and M5 transmembrane helices are responsive to calcium binding and directly induce rotation of the phosphorylation domain. Furthermore, we hypothesize that both the nucleotide-binding and beta-sheet domains are highly mobile and driven by Brownian motion to elicit phosphoenzyme formation and calcium transport, respectively. If so, the reaction cycle of Ca(2+)-ATPase would have elements of a Brownian ratchet, where the chemical reactions of ATP hydrolysis are used to direct the random thermal oscillations of an innately flexible molecule.
authors.affiliation: Skirball Institute for Biomolecular Medicine, Department of Cell Biology, New York University School of Medicine, 540 First Ave, New York, NY, 10016, USA.
authors.forename: Chen
authors.initials: C
authors.lastname: Xu
authors.forename: William J
authors.initials: WJ
authors.lastname: Rice
authors.forename: Wanzhong
authors.initials: W
authors.lastname: He
authors.forename: David L
authors.initials: DL
authors.lastname: Stokes
mesh_terms: D000255:Adenosine Triphosphate / Q000378:metabolism; D000818:Animals; D002118:Calcium / Q000378:metabolism; D000252:Calcium-Transporting ATPases / Q000737:chemistry / Q000378:metabolism* / Q000648:ultrastructure*; D002384:Catalysis; D020285:Cryoelectron Microscopy; D018360:Crystallography, X-Ray; D016650:Fluorescein-5-isothiocyanate / Q000378:metabolism; D017136:Ion Transport; D008958:Models, Molecular; D010766:Phosphorylation; D018583:Pliability; D017433:Protein Structure, Secondary; D017434:Protein Structure, Tertiary; D011817:Rabbits; D012399:Rotation; D014638:Vanadates / Q000037:antagonists & inhibitors / Q000378:metabolism
chemical_list: D014638:Vanadates; D000255:Adenosine Triphosphate; D000252:Calcium-Transporting ATPases; D016650:Fluorescein-5-isothiocyanate; D002118:Calcium