title: The leghemoglobin proximal heme pocket directs oxygen dissociation and stabilizes bound heme.
abstract: Sperm whale myoglobin (Mb) and soybean leghemoglobin (Lba) are two small, monomeric hemoglobins that share a common globin fold but differ widely in many other aspects. Lba has a much higher affinity for most ligands, and the two proteins use different distal and proximal heme pocket regulatory mechanisms to control ligand binding. Removal of the constraint provided by covalent attachment of the proximal histidine to the F-helices of these proteins decreases oxygen affinity in Lba and increases oxygen affinity in Mb, mainly because of changes in oxygen dissociation rate constants. Hence, Mb and Lba use covalent constraints in opposite ways to regulate ligand binding. Swapping the F-helices of the two proteins brings about similar effects, highlighting the importance of this helix in proximal heme pocket regulation of ligand binding. The F7 residue in Mb is capable of weaving a hydrogen-bonding network that holds the proximal histidine in a fixed orientation. On the contrary, the F7 residue in Lba lacks this property and allows the proximal histidine to assume a conformation favorable for higher ligand binding affinity. Geminate recombination studies indicate that heme iron reactivity on picosecond timescales is not the dominant cause for the effects observed in each mutation. Results also indicate that in Lba the proximal and distal pocket mutations probably influence ligand binding independently. These results are discussed in the context of current hypotheses for proximal heme pocket structure and function.
authors.affiliation: Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, Iowa 50011, USA.
authors.forename: Suman
authors.initials: S
authors.lastname: Kundu
authors.forename: Barry
authors.initials: B
authors.lastname: Snyder
authors.forename: Kaustuv
authors.initials: K
authors.lastname: Das
authors.forename: Pramit
authors.initials: P
authors.lastname: Chowdhury
authors.forename: Jaehun
authors.initials: J
authors.lastname: Park
authors.forename: Jacob W
authors.initials: JW
authors.lastname: Petrich
authors.forename: Mark S
authors.initials: MS
authors.lastname: Hargrove
mesh_terms: D000818:Animals; D002248:Carbon Monoxide / Q000737:chemistry; D006418:Heme / Q000737:chemistry* / Q000235:genetics; D007501:Iron / Q000737:chemistry; D007700:Kinetics; D007874:Leghemoglobin / Q000737:chemistry*; D008024:Ligands; D008958:Models, Molecular; D009154:Mutation; D009211:Myoglobin / Q000737:chemistry; D010100:Oxygen / Q000737:chemistry*; D014907:Whales
chemical_list: D007874:Leghemoglobin; D008024:Ligands; D009211:Myoglobin; D006418:Heme; D002248:Carbon Monoxide; D007501:Iron; D010100:Oxygen