MarC-V: a spreadsheet-based tool for analysis, normalization, and visualization of single cDNA microarray experiments.
The comprehensive analysis and visualization of data extracted from cDNA microarrays can be a time-consuming and error-prone process that becomes increasingly tedious with increased number of gene elements on a particular microarray. With the increasingly large number of gene elements on today's microarrays, analysis tools must be developed to meet this challenge. Here, we present MarC-V, a Microsoft Excel spreadsheet tool with Visual Basic macros to automate much of the visualization and calculation involved in the analysis process while providing the familiarity and flexibility of Excel. Automated features of this tool include (i) lower-bound thresholding, (ii) data normalization, (iii) generation of ratio frequency distribution plots, (iv) generation of scatter plots color-coded by expression level, (v) ratio scoring based on intensity measurements, (vi) filtering of data based on expression level or specific gene interests, and (vii) exporting data for subsequent multi-array analysis. MarC-V also has an importing function included for GenePix results (GPR) raw data files.
Schageman
J J
JJ
The University of Texas Southwestern Medical Center, Mcdermott Center for Human Growth and Development and Ryburn Cardiology Center, Dallas 75390-8591, USA. Jeff.Schageman@UTSouthwestern.edu
Basit
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Gallardo
T D
TD
Garner
H R
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Shohet
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D018076:DNA, Complementary; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D012984:Software
D018076:DNA, Complementary