PROMO: detection of known transcription regulatory elements using species-tailored searches.
We have developed a set of tools to construct positional weight matrices from known transcription factor binding sites in a species or taxon-specific manner, and to search for matches in DNA sequences.
Messeguer
Xavier
X
Algorithmics and Genetics Group, Software Department, Universitat Politècnica de Catalunya, C/Jordi Girona Salgado, 1-3, 08034 Barcelona, Spain.
Escudero
Ruth
R
Farré
Domènec
D
Núñez
Oscar
O
Martínez
Javier
J
Albà
M Mar
MM
D000818:Animals; D001665:Binding Sites / Q000235:genetics; D019295:Computational Biology; D004247:DNA / Q000235:genetics* / Q000378:metabolism*; D006801:Humans; D012984:Software; D013045:Species Specificity; D014157:Transcription Factors / Q000378:metabolism*
D014157:Transcription Factors; D004247:DNA