title: Modeling the active site of cytochrome oxidase: synthesis and characterization of a cross-linked histidine-phenol.
abstract: A cross-linked histidine-phenol compound was synthesized as a chemical analogue of the active site of cytochrome c oxidase. The structure of the cross-linked compound (compound 1) was verified by IR, (1)H and (13)C NMR, mass spectrometry, and single-crystal X-ray analysis. Spectrophotometric titrations indicated that the pK(a) of the phenolic proton on compound 1 (8.34) was lower than the pK(a) of tyrosine (10.1) or of p-cresol (10.2). This decrease in pK(a) is consistent with the hypothesis that a cross-linked histidine-tyrosine may facilitate proton delivery to the binuclear site in cytochrome c oxidase. Time-resolved optical absorption spectra of compound 1 at room temperature, generated by excitation at 266 nm in the presence and absence of dioxygen, indicated a species with absorption maxima at approximately 330 and approximately 500 nm, which we assign to the phenoxyl radical of compound 1. The electron paramagnetic resonance (EPR) spectra of compound 1, obtained after UV photolysis, confirmed the generation of a paramagnetic species at low temperature. Because the cross-linked compound lacks beta-methylene protons, the EPR line shape was dramatically altered when compared to that of the tyrosyl radical. However, simulation of the EPR line shape and measurement of the isotropic g value was consistent with a small coupling to the imidazole nitrogen and with little spin density perturbation in the phenoxyl ring. The ground-state Fourier transform infrared (FT-IR) spectrum of compound 1 showed that addition of the imidazole ring perturbs the frequency of the tyrosine ring stretching vibrations. The difference FT-IR spectrum, associated with the oxidation of the cross-linked compound, detected significant perturbations of the phenoxyl radical vibrational bands. We postulate that phenol oxidation produces a small delocalization of spin density onto the imidazole nitrogen of compound 1, which may explain its unique optical spectral properties.
authors.affiliation: Department of Chemistry and Biochemistry, University of California Santa Cruz, California 95064, USA.
authors.forename: Jenny A
authors.initials: JA
authors.lastname: Cappuccio
authors.forename: Idelisa
authors.initials: I
authors.lastname: Ayala
authors.forename: Gregory I
authors.initials: GI
authors.lastname: Elliott
authors.forename: Istvan
authors.initials: I
authors.lastname: Szundi
authors.forename: James
authors.initials: J
authors.lastname: Lewis
authors.forename: Joseph P
authors.initials: JP
authors.lastname: Konopelski
authors.forename: Bridgette A
authors.initials: BA
authors.lastname: Barry
authors.forename: Olöf
authors.initials: O
authors.lastname: Einarsdóttir
mesh_terms: D001665:Binding Sites; D018360:Crystallography, X-Ray; D004151:Dipeptides / Q000737:chemistry; D004578:Electron Spin Resonance Spectroscopy; D003576:Electron Transport Complex IV / Q000737:chemistry* / Q000378:metabolism; D006639:Histidine / Q000737:chemistry*; D008956:Models, Chemical; D010636:Phenols / Q000138:chemical synthesis / Q000737:chemistry*; D013056:Spectrophotometry, Ultraviolet; D017550:Spectroscopy, Fourier Transform Infrared; D014443:Tyrosine / Q000737:chemistry
chemical_list: D004151:Dipeptides; D010636:Phenols; D014443:Tyrosine; D006639:Histidine; D003576:Electron Transport Complex IV