title: Global analysis of gene expression in renal ischemia-reperfusion in the mouse.
abstract: Ischemia-induced acute renal failure (ARF) is a relatively common disorder with major morbidity and mortality. To study global gene expression during ARF, 6-week-old C57BL/6 male mice underwent 30 min of bilateral renal ischemia followed by reperfusion [I/R] or sham operation. Oligonucleotide microarrays [Affymetrix] with approximately 10,000 genes, 6,643 of which were present in mouse kidney, were used to analyze mRNA expression for up to 4 days following I/R. Fifty-two genes at day 1 and 40 at day 4 were up-regulated more than 4-fold [400%]. Seventy genes at day 1 and 30 genes at day 4 were down-regulated to under 0.25-fold from baseline [25%]. Real-time quantitative RT-PCR confirmed changes in expression for 8 genes of interest. Most of the induced transcripts are involved in cell structure, extracellular matrix, intracellular calcium binding, and cell division/differentiation. Our data identified several novel genes that may be important in renal repair after ischemia.
authors.affiliation: Renal Division, Department of Medicine, Brigham and Women's Hospital, Cambridge, Massachusetts 02139 , USA.
authors.forename: Takumi
authors.initials: T
authors.lastname: Yoshida
authors.forename: Shiow-Shih
authors.initials: SS
authors.lastname: Tang
authors.forename: Li-Li
authors.initials: LL
authors.lastname: Hsiao
authors.forename: Roderick V
authors.initials: RV
authors.lastname: Jensen
authors.forename: Julie R
authors.initials: JR
authors.lastname: Ingelfinger
authors.forename: Steven R
authors.initials: SR
authors.lastname: Gullans
mesh_terms: D000089982:ADP-Ribosylation Factor 6; D058186:Acute Kidney Injury / Q000235:genetics / Q000378:metabolism*; D000818:Animals; D002135:Calcium-Binding Proteins / Q000096:biosynthesis / Q000235:genetics; D002454:Cell Differentiation; D002455:Cell Division; D015536:Down-Regulation; D010450:Endopeptidases / Q000096:biosynthesis / Q000235:genetics; D016326:Extracellular Matrix Proteins / Q000096:biosynthesis / Q000235:genetics; D020869:Gene Expression Profiling; D006133:Growth Substances / Q000096:biosynthesis / Q000235:genetics; D007249:Inflammation / Q000235:genetics / Q000378:metabolism; D007700:Kinetics; D008297:Male; D051379:Mice; D008810:Mice, Inbred C57BL; D020411:Oligonucleotide Array Sequence Analysis; D012313:RNA / Q000096:biosynthesis; D015427:Reperfusion Injury / Q000235:genetics / Q000378:metabolism*; D015398:Signal Transduction / Q000235:genetics; D015854:Up-Regulation; D014945:Wound Healing
chemical_list: D000089982:ADP-Ribosylation Factor 6; D002135:Calcium-Binding Proteins; D016326:Extracellular Matrix Proteins; D006133:Growth Substances; D012313:RNA; D010450:Endopeptidases; C000715727:Arf6 protein, mouse