title: Non-isotopic mapping of ribosomal RNA synthesis and processing in the nucleolus.
abstract: The precise location of ribosomal RNA (rRNA) synthesis within the nucleolus is the subject of recent controversy; some investigators have detected nascent RNA in the dense fibrillar components (DFCs) while others have localized transcription to the fibrillar centers (FCs). We endeavored to resolve this controversy by applying a new technique for non-isotopic labeling of RNA and examined the synthesis and movement of non-isotopically labeled rRNA within the nucleolus. We found that rRNA is synthesized only in a restricted area of DFCs, also involving the boundary region with FCs. We traced a movement of RNA from transcription sites through DFCs to granular components. Our results indicate functional compartmentalization of DFCs with respect to the synthesis and processing of precursor rRNA. In situ mapping of the 5' leader sequence of the 5' external transcribed spacer together with transcription labeling indicated that transcription and the first steps in processing of precursor rRNA are spatially separated. Surprisingly, the results also pointed to a partially extended conformation of newly synthesized precursor rRNA transcripts.
authors.affiliation: Department of Cell Biology, Institute of Experimental Medicine, Academy of Sciences of the Czech Republic, Prague, Czech Republic.
authors.forename: D
authors.initials: D
authors.lastname: Stanek
authors.forename: K
authors.initials: K
authors.lastname: Koberna
authors.forename: A
authors.initials: A
authors.lastname: Pliss
authors.forename: J
authors.initials: J
authors.lastname: Malínský
authors.forename: M
authors.initials: M
authors.lastname: Masata
authors.forename: J
authors.initials: J
authors.lastname: Vecerová
authors.forename: M C
authors.initials: MC
authors.lastname: Risueño
authors.forename: I
authors.initials: I
authors.lastname: Raska
mesh_terms: D000818:Animals; D002466:Cell Nucleolus / Q000235:genetics / Q000378:metabolism* / Q000648:ultrastructure; D002868:Chromosomal Proteins, Non-Histone / Q000378:metabolism; D005260:Female; D019085:Fluorescent Antibody Technique, Direct; D049452:Green Fluorescent Proteins; D006367:HeLa Cells; D006801:Humans; D017403:In Situ Hybridization / Q000379:methods*; D008164:Luminescent Proteins / Q000032:analysis; D051379:Mice; D016253:Microscopy, Immunoelectron; D012322:RNA Precursors / Q000096:biosynthesis / Q000235:genetics / Q000378:metabolism; D012323:RNA Processing, Post-Transcriptional; D012335:RNA, Ribosomal / Q000096:biosynthesis* / Q000235:genetics / Q000378:metabolism*; D011817:Rabbits; D014158:Transcription, Genetic
chemical_list: D002868:Chromosomal Proteins, Non-Histone; D008164:Luminescent Proteins; D012322:RNA Precursors; D012335:RNA, Ribosomal; C047458:fibrillarin; D049452:Green Fluorescent Proteins