title: Generation of infectious cDNA clones of a Korean strain of tomato aspermy virus.
abstract: Infectious full-length cDNA clones of the Korean strain of tomato aspermy cucumovirus (KC-TAV) were constructed using a long-template reverse transcription-polymerase chain reaction. The in vitro RNA transcripts, which were produced using T7 RNA polymerase from full-length cDNAs, could systemically infect the Nicotiana tabacum cv. Xanti-nc plants and induce systemic symptoms on the upper leaves that are similar to the wildtype KC-TAV. The complete nucleotide sequences of genomic RNAs of KC-TAV were determined from the infectious full-length cDNA clones. RNA1 and RNA2 of KC-TAV contain 3412 nucleotides and 3074 nucleotides, respectively. RNA3 of KC-TAV, 2222 nucleotides long, encodes the 3a protein and coat protein (CP) that are separated by 295 nucleotides intergenic region. The overall sequence analysis of the whole genome of KC-TAV revealed a strong homology (99%) to the genome of the V-TAV strain, the only strain whose entire genomic nucleotide sequence was available in the database, and an overall 60% homology to those of other cucumber mosaic virus and peanut stunt virus strains. A sequence comparison analysis of the deduced amino acid sequences of cDNAs of KC-TAV RNA 1, 2, and 3 indicates that there is no genetic diversity in the TAV population, although the virus exists in different geographical distributions.
authors.affiliation: Graduate School of Biotechnology, Korea University, Seoul.
authors.forename: Seung Kook
authors.initials: SK
authors.lastname: Choi
authors.forename: Jang Kyung
authors.initials: JK
authors.lastname: Choi
authors.forename: Ki Hyun
authors.initials: KH
authors.lastname: Ryu
authors.forename: Won Mok
authors.initials: WM
authors.lastname: Park
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D011723:Chrysanthemum cinerariifolium / Q000821:virology; D003001:Cloning, Molecular; D017799:Cucumovirus / Q000235:genetics* / Q000302:isolation & purification / Q000472:pathogenicity; D018076:DNA, Complementary / Q000235:genetics*; D004279:DNA, Viral / Q000235:genetics*; D007723:Korea; D008969:Molecular Sequence Data; D012367:RNA, Viral / Q000235:genetics; D013045:Species Specificity; D014774:Virulence / Q000235:genetics
chemical_list: D018076:DNA, Complementary; D004279:DNA, Viral; D012367:RNA, Viral