title: Investigation of the electron-transfer mechanism by cross-linking between Zn-substituted myoglobin and cytochrome b(5).
abstract: We have investigated the photoinduced electron transfer (ET) in the 1:1 cross-linked complex (CL-ZnMb/b(5)) formed by a cross-linking reagent, EDC, between Zn-substituted myoglobin (ZnMb) and cytochrome b(5) (Cytb(5)) to reveal the mechanism of the inter-protein ET reactions under the condition of multiple encounter complexes. A variety of the ZnMb-Cytb(5) orientations was suggested because of failure to identify the single and specific cross-linking site on Cytb(5) by the peptide-mapping analysis using mass spectrometry. In CL-ZnMb/b(5), a laser pulse generates the triplet excited state of the ZnMb domain ((3)ZnMb()), which can transfer one electron to the Cytb(5) domain. The decay kinetics of (3)ZnMb() in CL-ZnMb/b(5) consists of a facile power-law ET phase to Cytb(5) domain ( approximately 30%) and a slower single-exponential phase ( approximately 70%). The application of the Marcus equation to this power-law phase indicates that CL-ZnMb/b(5) has a variety of ZnMb-Cytb(5) orientations for the facile ET in which the distance between the redox centers (D-A distance) is distributed over 13-20 A. The single-exponential phase in the (3)ZnMb() decay kinetics of CL-ZnMb/b(5) is similar to the intrinsic decay of (3)ZnMb() in its rate constant, 65 s(-)(1). This implies that the ET is impeded in about 70% of the total ZnMb-Cytb(5) orientations due to the D-A distance larger than 20 A. Combined with the results of the Brownian dynamics simulations for the encounter complexes, the overall bimolecular ET rate, k(app), can be reproduced by the sum of the ET rates for the minor encounter complexes of which D-A distance is less than 20 A. On the other hand, the encounter complexes with longer D-A distance, which are the majority of the encounter complexes between ZnMb and Cytb(5), have little contribution to the overall bimolecular ET rate. These observations experimentally demonstrate that ZnMb forms a variety of encounter complexes with Cytb(5), among which a minor set of the complexes with the shorter D-A distance (< approximately 20 A) regulates the overall bimolecular ET between the proteins.
authors.affiliation: Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Kyoto 606-8501, Japan.
authors.forename: Yoshiaki
authors.initials: Y
authors.lastname: Furukawa
authors.forename: Fumihiro
authors.initials: F
authors.lastname: Matsuda
authors.forename: Koichiro
authors.initials: K
authors.lastname: Ishimori
authors.forename: Isao
authors.initials: I
authors.lastname: Morishima
mesh_terms: D000818:Animals; D003198:Computer Simulation; D003432:Cross-Linking Reagents / Q000737:chemistry; D015786:Cytochromes b5 / Q000737:chemistry* / Q000378:metabolism; D004583:Electrons; D005022:Ethyldimethylaminopropyl Carbodiimide / Q000737:chemistry; D006736:Horses; D007700:Kinetics; D009211:Myoglobin / Q000737:chemistry* / Q000378:metabolism; D010449:Peptide Mapping; D010782:Photolysis; D011487:Protein Conformation; D051381:Rats; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; D015032:Zinc / Q000737:chemistry* / Q000378:metabolism
chemical_list: D003432:Cross-Linking Reagents; D009211:Myoglobin; D015786:Cytochromes b5; D015032:Zinc; D005022:Ethyldimethylaminopropyl Carbodiimide