title: Comparison of extracellular enzyme activities and community composition of attached and free-living bacteria in porous medium columns.
abstract: Free-living and surface-associated microbial communities in sand-packed columns perfused with groundwater were compared by examination of compositional and functional characteristics. The composition of the microbial communities was assessed by bulk DNA extraction, PCR amplification of 16S ribosomal DNA fragments, separation of these fragments by denaturing gradient gel electrophoresis, and sequence analysis. Community function was assessed by measurement of beta-glucosidase and aminopeptidase extracellular enzyme activities. Free-living populations in the aqueous phase exhibited a greater diversity of phylotypes than populations associated with the solid phase. The attached bacterial community displayed significantly greater beta-glucosidase and aminopeptidase enzyme activities per volume of porous medium than those of the free-living community. On a per-cell basis, the attached community had a significantly higher cell-specific aminopeptidase enzyme activity (1.07 x 10(-7) nmol cell(-1) h(-1)) than the free-living community (5.02 x 10(-8) nmol cell(-1) h(-1)). Conversely, the free-living community had a significantly higher cell-specific beta-glucosidase activity (1.92 x 10(-6) nmol cell(-1) h(-1)) than the surface-associated community (6.08 x 10(-7) nmol cell(-1) h(-1)). The compositional and functional differences observed between these two communities may reflect different roles for these distinct but interacting communities in the decomposition of natural organic matter or biodegradation of xenobiotics in aquifers.
authors.affiliation: Idaho National Engineering and Environmental Laboratory, Biotechnologies Department, Idaho Falls, Idaho 83415-2203, USA. mik4@inel.gov
authors.forename: R Michael
authors.initials: RM
authors.lastname: Lehman
authors.forename: Seán P
authors.initials: SP
authors.lastname: O'Connell
mesh_terms: D000626:Aminopeptidases / Q000378:metabolism; D000818:Animals; D001419:Bacteria / Q000145:classification* / Q000201:enzymology* / Q000235:genetics / Q000302:isolation & purification; D001422:Bacterial Adhesion; D001431:Bacteriological Techniques; D003470:Culture Media; D004275:DNA, Ribosomal / Q000032:analysis; D017753:Ecosystem; D005374:Filtration / Q000379:methods; D005618:Fresh Water / Q000382:microbiology*; D019015:Geologic Sediments / Q000382:microbiology*; D010933:Plankton; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D001617:beta-Glucosidase / Q000378:metabolism
chemical_list: D003470:Culture Media; D004275:DNA, Ribosomal; D012336:RNA, Ribosomal, 16S; D001617:beta-Glucosidase; D000626:Aminopeptidases