title: Optimal temperature input design for estimation of the square root model parameters: parameter accuracy and model validity restrictions.
abstract: As part of the model building process, parameter estimation is of great importance in view of accurate prediction making. Confidence limits on the predicted model output are largely determined by the parameter estimation accuracy that is reflected by its parameter estimation covariance matrix. In view of the accurate estimation of the Square Root model parameters, Bernaerts et al. have successfully applied the techniques of optimal experiment design for parameter estimation [Int. J. Food Microbiol. 54 (1-2) (2000) 27]. Simulation-based results have proved that dynamic (i.e., time-varying) temperature conditions characterised by a large abrupt temperature increase yield highly informative cell density data enabling precise estimation of the Square Root model parameters. In this study, it is shown by bioreactor experiments with detailed and precise sampling that extreme temperature shifts disturb the exponential growth of Escherichia coli K12. A too large shift results in an intermediate lag phase. Because common growth models lack the ability to model this intermediate lag phase, temperature conditions should be designed such that exponential growth persist even though the temperature may be changing. The current publication presents (i) the design of an optimal temperature input guaranteeing model validity yet yielding accurate Square Root model parameters, and (ii) the experimental implementation of the optimal input in a computer-controlled bioreactor. Starting values for the experiment design are generated by a traditional two-step procedure based on static experiments. Opposed to the single step temperature profile, the novel temperature input comprises a sequence of smaller temperature increments. The structural development of the temperature input is extensively explained. High quality data of E. coli K12 under optimally varying temperature conditions realised in a computer-controlled bioreactor yield accurate estimates for the Square Root model parameters. The latter is illustrated by means of the individual confidence intervals and the joint confidence region.
authors.affiliation: Bioprocess Technology and Control (BioTeC), Department of Food and Microbial Technology, Katholieke Universiteit Leuven, Belgium.
authors.forename: Kristel
authors.initials: K
authors.lastname: Bernaerts
authors.forename: Roos D
authors.initials: RD
authors.lastname: Servaes
authors.forename: Steven
authors.initials: S
authors.lastname: Kooyman
authors.forename: Karina J
authors.initials: KJ
authors.lastname: Versyck
authors.forename: Jan F
authors.initials: JF
authors.lastname: Van Impe
mesh_terms: D019149:Bioreactors; D015169:Colony Count, Microbial; D004926:Escherichia coli / Q000254:growth & development*; D007700:Kinetics; D008954:Models, Biological; D012680:Sensitivity and Specificity; D013696:Temperature