title: Stop codons affect 5' splice site selection by surveillance of splicing.
abstract: Pre-mRNA splicing involves recognition of a consensus sequence at the 5' splice site (SS). However, only some of the many potential sites that conform to the consensus are true ones, whereas the majority remain silent and are not normally used for splicing. We noticed that in most cases the utilization of such a latent intronic 5' SS for splicing would introduce an in-frame stop codon into the resultant mRNA. This finding suggested a link between SS selection and maintenance of an ORF within the mRNA. Here we tested this idea by analyzing the splicing of pre-mRNAs in which in-frame stop codons upstream of a latent 5' SS were mutated. We found that splicing with the latent site is indeed activated by such mutations. Our findings predict the existence of a checking mechanism, as a component of the nuclear pre-mRNA splicing machine, to ensure the maintenance of an ORF. This notion is highly important for accurate gene expression, as perturbations that would lead to splicing at these latent sites are expected to introduce in-frame stop codons into the majority of mRNAs.
authors.affiliation: Department of Genetics, Hebrew University of Jerusalem, Jerusalem 91904, Israel.
authors.forename: Binghui
authors.initials: B
authors.lastname: Li
authors.forename: Chaim
authors.initials: C
authors.lastname: Wachtel
authors.forename: Elana
authors.initials: E
authors.lastname: Miriami
authors.forename: Galit
authors.initials: G
authors.lastname: Yahalom
authors.forename: Gilgi
authors.initials: G
authors.lastname: Friedlander
authors.forename: Gil
authors.initials: G
authors.lastname: Sharon
authors.forename: Ruth
authors.initials: R
authors.lastname: Sperling
authors.forename: Joseph
authors.initials: J
authors.lastname: Sperling
mesh_terms: D017398:Alternative Splicing; D000818:Animals; D001665:Binding Sites; D002460:Cell Line; D003062:Codon; D018389:Codon, Nonsense; D018388:Codon, Terminator; D006224:Cricetinae; D005347:Fibroblasts / Q000378:metabolism; D006801:Humans; D007068:Iduronidase / Q000737:chemistry; D008647:Mesocricetus; D008957:Models, Genetic; D009154:Mutation; D016366:Open Reading Frames; D010957:Plasmids / Q000378:metabolism; D017354:Point Mutation; D011485:Protein Binding; D012333:RNA, Messenger / Q000378:metabolism; D020133:Reverse Transcriptase Polymerase Chain Reaction; D014162:Transfection
chemical_list: D003062:Codon; D018389:Codon, Nonsense; D018388:Codon, Terminator; D012333:RNA, Messenger; D007068:Iduronidase