title: A unique substrate binding mode discriminates membrane type-1 matrix metalloproteinase from other matrix metalloproteinases.
abstract: In our study, we characterized the substrate recognition properties of membrane type-1 matrix metalloproteinase (MT1-MMP; also known as MMP-14), a key enzyme in tumor cell invasion and metastasis. A panel of optimal peptide substrates for MT1-MMP was identified using substrate phage display. The substrates can be segregated into four groups based on their degree of selectivity for MT1-MMP. Substrates with poor selectivity for MT1-MMP are comprised predominately of the Pro-X-X- downward arrow-X(Hy) motif that is recognized by a number of MMPs. Highly selective substrates lack the characteristic Pro at the P(3) position; instead they contain an Arg at the P(4) position. This P(4) Arg is essential for efficient hydrolysis and for selectivity for MT1-MMP. Molecular modeling indicates that the selective substrates adopt a linear conformation that extends along the entire catalytic pocket of MT1-MMP, whereas non-selective substrates are kinked at the conserved P(3) Pro residue. Importantly, the selective substrates can be made non-selective by insertion of a proline kink at P(3), without significantly reducing overall k(cat)/K(m) values. Altogether the study provides a structural basis for selective and non-selective substrate recognition by MT1-MMP. The findings in this report are likely to explain several aspects of MT1-MMP biology.
authors.affiliation: Program on Cell Adhesion, The Cancer Research Center, The Burnham Institute, La Jolla, California 92037, USA.
authors.forename: Steven J
authors.initials: SJ
authors.lastname: Kridel
authors.forename: Hisako
authors.initials: H
authors.lastname: Sawai
authors.forename: Boris I
authors.initials: BI
authors.lastname: Ratnikov
authors.forename: Emily I
authors.initials: EI
authors.lastname: Chen
authors.forename: Weizhong
authors.initials: W
authors.lastname: Li
authors.forename: Adam
authors.initials: A
authors.lastname: Godzik
authors.forename: Alex Y
authors.initials: AY
authors.lastname: Strongin
authors.forename: Jeffrey W
authors.initials: JW
authors.lastname: Smith
mesh_terms: D020134:Catalytic Domain; D006868:Hydrolysis; D007700:Kinetics; D020778:Matrix Metalloproteinase 2 / Q000737:chemistry / Q000378:metabolism; D020780:Matrix Metalloproteinase 9 / Q000737:chemistry / Q000378:metabolism; D053504:Matrix Metalloproteinases, Membrane-Associated; D008666:Metalloendopeptidases / Q000737:chemistry / Q000378:metabolism*; D013379:Substrate Specificity
chemical_list: D053504:Matrix Metalloproteinases, Membrane-Associated; D008666:Metalloendopeptidases; D020778:Matrix Metalloproteinase 2; D020780:Matrix Metalloproteinase 9