Gaussian fluctuations and linear response in an electron transfer protein.
In response to charge separation or transfer, polar liquids respond in a simple linear fashion. A similar linear response for proteins might be expected from the central limit theorem and is postulated in widely used theories of protein electrostatics, including the Marcus electron transfer theory and dielectric continuum theories. Although these theories are supported by a variety of experimental data, the exact validity of a linear protein dielectric response has been difficult to determine. Molecular dynamics simulations are presented that establish a linear dielectric response of both protein and surrounding solvent over the course of a biologically relevant electron transfer reaction: oxido-reduction of yeast cytochrome c in solution. Using an umbrella-sampling free energy approach with long simulations, an accurate treatment of long-range electrostatics and both classical and quantum models of the heme, good agreement is obtained with experiment for the redox potential relative to a heme-octapeptide complex. We obtain a reorganization free energy that is only half that for heme-octapeptide and is reproduced with a dielectric continuum model where the heme vicinity has a dielectric constant of only 1.1. This value implies that the contribution of protein reorganization to the electron transfer free energy barrier is reduced almost to the theoretical limit (a dielectric of one), and that the fluctuations of the electrostatic potential on the heme have a simple harmonic form, in accord with Marcus theory, even though the fluctuations of many individual protein groups (especially at the protein surface) are anharmonic.
Simonson
Thomas
T
Département de Biologie et Génomique Structurales, Institut de Génétique et Biologie Moléculaire et Cellulaire (CNRS), 1 Rue Laurent Fries, 67404 Illkirch-Strasbourg, France. simonson@igbmc.u-strasbg.fr
D003198:Computer Simulation; D003574:Cytochrome c Group / Q000737:chemistry*; D004579:Electron Transport; D004735:Energy Transfer; D006418:Heme / Q000737:chemistry; D016014:Linear Models; D008956:Models, Chemical; D015233:Models, Statistical; D016011:Normal Distribution; D010084:Oxidation-Reduction; D012441:Saccharomyces cerevisiae
D003574:Cytochrome c Group; D006418:Heme