title: Effects of guanidine hydrochloride and high pressure on subsite flexibility of beta-amylase.
abstract: We investigated the effects of guanidine hydrochloride (GuHCl) and high pressure on the conformational flexibility of the active site of sweet potato beta-amylase by monitoring the sulfhydryl reaction and the enzymatic activity. The reactivity of Cys345 at the active site, one of six inert half cystine residues of this enzyme, was enhanced by GuHCl at concentrations below 0.5 M. A GuHCl-induced change of the active site was also observed through an intensity change in the near-UV circular dichroism (CD) spectrum. On the other hand, the native conformation of sweet potato beta-amylase observed through fluorescence polarization, far-UV CD spectrum and intrinsic fluorescence was not influenced by GuHCl at concentrations below 0.5 M. Therefore, Cys345 reaction caused by GuHCl was due to an alteration of the local conformation of the active site. GuHCl-induced reaction of Cys345, located in the vicinity of subsites 3 and 4, is attributed to enhanced subsite flexibility, which is responsible for substrate slipping in a single-chain attack mechanism. Due to the flexible conformation, the local region of the subsite is more susceptible to GuHCl perturbation than the molecule overall. The enzymatic activity of sweet potato beta-amylase was reversibly inhibited by GuHCl at concentrations below 0.5 M, and kinetic analysis of the enzymatic mechanism showed that GuHCl decreases the kcat value. High pressure below 400 MPa also inactivated sweet potato beta-amylase with an increase in Cys345 reactivity. These findings indicated that excessively enhanced subsite flexibility reduced the enzymatic activity of sweet potato beta-amylase.
authors: Department of Polymer Science and Engineering, Kyoto Institute of Technology, Matsugasaki, Sakyo, 606-8585, Kyoto, Japan. tanaka@ipc.kit.ac.jp
authors: Naoki
authors: N
authors: Tanaka
authors: Sachie
authors: S
authors: Kajimoto
authors: Daisuke
authors: D
authors: Mitani
authors: Shigeru
authors: S
authors: Kunugi
mesh_terms: D001665:Binding Sites; D002942:Circular Dichroism; D019791:Guanidine / Q000494:pharmacology*; D027723:Ipomoea batatas / Q000201:enzymology*; D008958:Models, Molecular; D011312:Pressure; D011487:Protein Conformation; D017510:Protein Folding; D001614:beta-Amylase / Q000037:antagonists & inhibitors* / Q000737:chemistry
chemical_list: D001614:beta-Amylase; D019791:Guanidine