Substrate entropy in enzyme enantioselectivity: an experimental and molecular modeling study of a lipase.
The temperature dependence of the enantioselectivity of Candida antarctica lipase B for 3-hexanol, 2-butanol, 3-methyl-2-butanol, 3,3-dimethyl-2-butanol, and 1-bromo-2-butanol revealed that the differential activation entropy, deltaR-SdeltaS, was as significant as the differential activation enthalpy, DeltaR-SdeltaH, to the enantiomeric ratio, E. 1-Bromo-2-butanol, with isosteric substituents, displayed the largest deltaR-SdeltaS. 3-Hexanol displayed, contrary to other sec-alcohols, a positive deltaR-SdeltaS. In other words, for 3-hexanol the preferred R-enantiomer is not only favored by enthalpy but also by entropy. Molecular dynamics (MD) simulations and systematic search calculations of the substrate accessible volume within the active site revealed that the (R)-3-hexanol transition state (TS) accessed a larger volume within the active site than the (S)-3-hexanol TS. This correlates well with the higher TS entropy of (R)-3-hexanol. In addition, this enantiomer did also yield a higher number of allowed conformations, N, from the systematic search routines, than did the S-enantiomer. The substrate accessible volume was greater for the enantiomer preferred by entropy also for 2-butanol. For 3,3-dimethyl-2-butanol, however, neither MD-simulations nor systematic search calculations yielded substrate accessible volumes that correlate to TS entropy. Ambiguous results were achieved for 3-methyl-2-butanol.
Ottosson
Jenny
J
Department of Biotechnology, Royal Institute of Technology, Stockholm, Sweden.
Fransson
Linda
L
Hult
Karl
K
D000438:Alcohols / Q000737:chemistry / Q000378:metabolism; D001665:Binding Sites; D003198:Computer Simulation; D019277:Entropy; D005656:Fungal Proteins; D007700:Kinetics; D008049:Lipase / Q000737:chemistry* / Q000378:metabolism; D008958:Models, Molecular; D013237:Stereoisomerism; D013379:Substrate Specificity; D013816:Thermodynamics
D000438:Alcohols; D005656:Fungal Proteins; D008049:Lipase; C431349:lipase B, Candida antarctica