Partial automation of database processing of simulation outputs from L-systems models of plant morphogenesis.
Models of plant architecture allow us to explore how genotype environment interactions effect the development of plant phenotypes. Such models generate masses of data organised in complex hierarchies. This paper presents a generic system for creating and automatically populating a relational database from data generated by the widely used L-system approach to modelling plant morphogenesis. Techniques from compiler technology are applied to generate attributes (new fields) in the database, to simplify query development for the recursively-structured branching relationship. Use of biological terminology in an interactive query builder contributes towards making the system biologist-friendly.
Chen
Yi- Ping Phoebe
Y
Faculty of Information Technology, Centre for Information Technology Innovation, Queensland University of Technology, Qld 4001, Australia. p.chen@qut.edu.au
Hanan
Jim
J
D001331:Automation; D003628:Database Management Systems; D008954:Models, Biological; D009024:Morphogenesis; D063245:Plant Development