title: Decrease and gain of gene expression are equally discriminatory markers for prostate carcinoma: a gene expression analysis on total and microdissected prostate tissue.
abstract: Information on over- and underexpressed genes in prostate cancer in comparison to adjacent normal tissue was sought by DNA microarray analysis. Approximately 12,600 mRNA sequences were analyzed from a total of 26 tissue samples (17 untreated prostate cancers, 9 normal adjacent to prostate cancer tissues) obtained by prostatectomy. Hierarchical clustering was performed. Expression levels of 63 genes were found significantly (at least 2.5-fold) increased, whereas expression of 153 genes was decreased (at least 2.5-fold) in prostate cancer versus adjacent normal tissue. In addition to previously described genes such as hepsin, overexpression of several genes was found that has not drawn attention before, such as the genes encoding the specific granule protein (SGP28), alpha-methyl-acyl-CoA racemase, low density lipoprotein (LDL)-phospholipase A2, and the anti-apoptotic gene PYCR1. The radiosensitivity gene ATDC and the genes encoding the DNA-binding protein inhibitor ID1 and the phospholipase inhibitor uteroglobin were significantly down-regulated in the cancer samples. DNA microarray data for eight genes were confirmed quantitatively in five normal and five cancer tissues by real-time reverse transcriptase-polymerase chain reaction with a high correlation between the two methods. Laser capture microdissection of epithelial and stromal compartments from cancer and histological normal specimens followed by an amplification protocol for low levels of RNA (<0.1 microg) allowed us to distinguish between gene expression profiles characteristic of epithelial cells and those typical of stroma. Most of the genes identified in the nonmicrodissected tumor material as up-regulated were indeed overexpressed in cancerous epithelium rather than in the stromal compartment. We conclude that development of prostate cancer is associated with down-regulation as well as up-regulation of genes that show complex differential regulation in epithelia and stroma. Some of the gene expression alterations identified in this study may prove useful in the development of novel diagnostic and therapeutic strategies.
authors.affiliation: Department of Cellular and Molecular Pathology, Deutsches Krebsforschungszentrūm Heidelberg, Heidelberg, Germany.
authors.forename: Thomas
authors.initials: T
authors.lastname: Ernst
authors.forename: Manfred
authors.initials: M
authors.lastname: Hergenhahn
authors.forename: Marc
authors.initials: M
authors.lastname: Kenzelmann
authors.forename: Clemens D
authors.initials: CD
authors.lastname: Cohen
authors.forename: Mahnaz
authors.initials: M
authors.lastname: Bonrouhi
authors.forename: Annette
authors.initials: A
authors.lastname: Weninger
authors.forename: Ralf
authors.initials: R
authors.lastname: Klären
authors.forename: Elisabeth F
authors.initials: EF
authors.lastname: Gröne
authors.forename: Manfred
authors.initials: M
authors.lastname: Wiesel
authors.forename: Christof
authors.initials: C
authors.lastname: Güdemann
authors.forename: Jens
authors.initials: J
authors.lastname: Küster
authors.forename: Winfried
authors.initials: W
authors.lastname: Schott
authors.forename: Gerd
authors.initials: G
authors.lastname: Staehler
authors.forename: Matthias
authors.initials: M
authors.lastname: Kretzler
authors.forename: Monica
authors.initials: M
authors.lastname: Hollstein
authors.forename: Hermann-Josef
authors.initials: HJ
authors.lastname: Gröne
mesh_terms: D000230:Adenocarcinoma / Q000175:diagnosis / Q000235:genetics / Q000473:pathology; D000368:Aged; D015972:Gene Expression Regulation, Neoplastic; D005819:Genetic Markers; D006801:Humans; D008297:Male; D008875:Middle Aged; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D011230:Precancerous Conditions / Q000175:diagnosis / Q000235:genetics; D011467:Prostate / Q000473:pathology*; D011471:Prostatic Neoplasms / Q000175:diagnosis* / Q000235:genetics / Q000473:pathology; D012333:RNA, Messenger / Q000378:metabolism; D020133:Reverse Transcriptase Polymerase Chain Reaction
chemical_list: D005819:Genetic Markers; D012333:RNA, Messenger