title: TWGDAM validation of AmpFlSTR PCR amplification kits for forensic DNA casework.
abstract: Laboratory procedures used in short tandem repeat (STR) analysis were subjected to various scenarios that assessed reliability and identified potential limitations. These validation studies were designed as recommended by the Technical Working Group on DNA Analysis Methods (TWGDAM) and the DNA Advisory Board (DAB) (17,18). Various DNA samples were amplified by the polymerase chain reaction (PCR) using AmpFlSTR PCR Amplification Kits (i.e., AmpFlSTR Green I, Profiler, Profiler Plus, and COfiler kits), detected with ABI Prism instrumentation, and analyzed using GeneScan and Genotyper software. Data acquired in these studies reinforced an existing body of knowledge and expertise regarding application and interpretation of STR typing in the forensic science community. Consistent STR genotypes were detected in various body tissues and fluids. Inter-laboratory comparisons produced concordant genotype results. Quantitative interpretational aids for DNA mixtures were characterized. Ability of the typing systems to type potentially compromised samples reliably was evaluated. Nonprobative case evidentiary DNA was successfully amplified, genotyped, and interpreted. Potential limitations or cautionary factors in the interpretation of minimal fluorescence intensity were demonstrated. Differential amplification between loci was observed when PCR was inhibited; preferential amplification typically was not. Single AmpFlSTR locus amplification did not offer consistent benefit over AmpFlSTR multiplexing, even in cases of DNA degradation or PCR inhibition. During rigorous evaluation, AmpFlSTR PCR Amplification Kits reproducibly yielded sensitive and locus-specific results, as required in routine forensic analyses.
authors.affiliation: PE Applied Biosystems, Human Identification Group, Foster City, CA, USA.
authors.forename: Cydne L
authors.initials: CL
authors.lastname: Holt
authors.forename: Martin
authors.initials: M
authors.lastname: Buoncristiani
authors.forename: Jeanette M
authors.initials: JM
authors.lastname: Wallin
authors.forename: Theresa
authors.initials: T
authors.lastname: Nguyen
authors.forename: Katherine D
authors.initials: KD
authors.lastname: Lazaruk
authors.forename: P S
authors.initials: PS
authors.lastname: Walsh
mesh_terms: D004247:DNA / Q000032:analysis; D016172:DNA Fingerprinting; D017931:DNA Primers; D005554:Forensic Medicine / Q000379:methods* / Q000592:standards; D006801:Humans; D021141:Nucleic Acid Amplification Techniques; D016133:Polymerase Chain Reaction / Q000379:methods*; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity; D020080:Tandem Repeat Sequences
chemical_list: D017931:DNA Primers; D004247:DNA