title: Ferric hydroxamate binding protein FhuD from Escherichia coli: mutants in conserved and non-conserved regions.
abstract: Uptake of iron complexes into the gram-negative bacterial cell requires highly specific outer membrane receptors and specific ATP-dependent (ATP-Binding-Cassette (ABC)) transport systems located in the inner membrane. The latter type of import system is characterized by a periplasmic binding protein (BP), integral membrane proteins, and membrane-associated ATP-hydrolyzing proteins. In gram-positive bacteria lacking the periplasmic space, the binding proteins are lipoproteins tethered to the cytoplasmic membrane. To date, there is little structural information about the components of ABC transport systems involved in iron complex transport. The recently determined structure of the Escherichia coli periplasmic ferric siderophore binding protein FhuD is unique for an ABC transport system (Clarke et al. 2000). Unlike other BP's, FhuD has two domains connected by a long alpha-helix. The ligand binds in a shallow pocket between the two domains. In vivo and in vitro analysis of single amino acid mutants of FhuD identified several residues that are important for proper functioning of the protein. In this study, the mutated residues were mapped to the protein structure to define special areas and specific amino acid residues in E. coli FhuD that are vital for correct protein function. A number of these important residues were localized in conserved regions according to a multiple sequence alignment of E. coli FhuD with other BP's that transport siderophores, heme, and vitamin B12. The alignment and structure prediction of these polypeptides indicate that they form a distinct family of periplasmic binding proteins.
authors.affiliation: Department of Biological Sciences, University of Calgary, Alberta, Canada.
authors.forename: Teresa E
authors.initials: TE
authors.lastname: Clarke
authors.forename: Martin R
authors.initials: MR
authors.lastname: Rohrbach
authors.forename: Leslie W
authors.initials: LW
authors.lastname: Tari
authors.forename: Hans J
authors.initials: HJ
authors.lastname: Vogel
authors.forename: Wolfgang
authors.initials: W
authors.lastname: Köster
mesh_terms: D000595:Amino Acid Sequence; D002352:Carrier Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D017124:Conserved Sequence / Q000235:genetics*; D004926:Escherichia coli / Q000235:genetics; D029968:Escherichia coli Proteins / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism*; D019143:Evolution, Molecular; D005290:Ferric Compounds / Q000378:metabolism*; D006877:Hydroxamic Acids / Q000378:metabolism*; D026901:Membrane Transport Proteins / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009154:Mutation; D033902:Periplasmic Binding Proteins / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism*; D010641:Phenotype; D010802:Phylogeny
chemical_list: D002352:Carrier Proteins; D029968:Escherichia coli Proteins; D005290:Ferric Compounds; D006877:Hydroxamic Acids; D026901:Membrane Transport Proteins; D033902:Periplasmic Binding Proteins; C074579:iron (III) hydroxamate; C069969:fhuD protein, E coli