ENDscript: a workflow to display sequence and structure information.
ENDscript is a web server grouping popular programs such as BLAST, Multalin and DSSP. It uses as query the co-ordinates file of a protein in Protein Data Bank format and generates PostScript and png figures showing: residues conserved after a multiple alignment against homologous sequences, secondary structure elements, accessibility, hydropathy and intermolecular contacts. Thus, the user can relate quickly 1D, 2D and 3D information of a protein of known structure.


BACKGROUND
http://genopole.toulouse.inra.fr/ENDscript
Gouet
Patrice
P
Laboratoire de Bio-Cristallographie, IBCP-CNRS UMR 5086, 7 passage du Vercors, 69367 Lyon Cedex 07, France. p.gouet@ibcp.fr
Courcelle
Emmanuel
E
D000595:Amino Acid Sequence; D003626:Data Display; D003628:Database Management Systems; D016208:Databases, Factual; D030562:Databases, Protein; D016247:Information Storage and Retrieval; D020407:Internet; D008969:Molecular Sequence Data; D011506:Proteins / Q000737:chemistry / Q000235:genetics; D016415:Sequence Alignment; D020539:Sequence Analysis, Protein / Q000379:methods*
D011506:Proteins