title: Study of the conformational profile of the norbornane analogues of phenylalanine.
abstract: The conformational profile of the eight stereoisomeric 2-amino-3-phenylnorbornane-2-carboxylic acids (2-amino-3-phenylbicyclo[2.2.1]heptane-2-carboxylic acids) has been assessed by computational methods. These molecules constitute a series of four enantiomeric pairs that can be considered as rigid analogues of either L- or D-phenylalanine. The conformational space of their N-acetyl methylamide derivatives has been explored within the molecular mechanics framework, using the parm94 set of parameters of the AMBER force field. Local minimum energy conformations have been further investigated at the ab initio level by means of the Hartree-Fock and second order Moller-Plesset perturbation energy calculations using a 6-31G(d) basis set. The results of the present work suggest that the bulky norbornane structure induces two kinds of conformational constraints on the residues. On one hand, those of a steric nature directly imposed by the bicycle on the peptide backbone and, on the other hand, those that limit the orientations attainable by the phenyl ring which, in turn, reduces further the flexibility of the peptide backbone. A comparative analysis of the conformational profile of the phenylnorbornane amino acids with that of the norbornane amino acids devoid of the beta-phenyl substituent suggests that the norbornane system hampers the residue to adopt extended conformations in favour of C7-like structures. However, the bicycle itself does not impart a clear preference for any of the two possible C7 minima. It is the aromatic side chain, which is forced to adopt an almost eclipsed orientation, that breaks this symmetry introducing a marked preference for a single region of the (phi, psi) conformational space in each of the phenylalanine norbornane analogues investigated.
authors.affiliation: Dept. d'Enginyeria Quimica, UPC, ETSEIB, Barcelona, Spain.
authors.forename: Arnau
authors.initials: A
authors.lastname: Cordomí
authors.forename: Jesus
authors.initials: J
authors.lastname: Gomez-Catalan
authors.forename: Ana I
authors.initials: AI
authors.lastname: Jimenez
authors.forename: Carlos
authors.initials: C
authors.lastname: Cativiela
authors.forename: Juan J
authors.initials: JJ
authors.lastname: Perez
mesh_terms: D003500:Cyclization; D008958:Models, Molecular; D009636:Norbornanes / Q000737:chemistry*; D010649:Phenylalanine / Q000031:analogs & derivatives*; D011487:Protein Conformation; D013237:Stereoisomerism; D013816:Thermodynamics
chemical_list: D009636:Norbornanes; D010649:Phenylalanine