Stabilized viral nucleic acids in plasma as an alternative shipping method for NAT.
BACKGROUND
Preservation of the integrity of viral nucleic acids in blood specimens during shipping and handling is crucial for NAT and viral load monitoring. An economical and convenient method is described for nucleic acid stabilization by using an RNA stabilizing solution (RNAlater, Ambion) in plasma that is designed for the shipment of samples to tropical countries.


METHODS
HCV, HIV, and HBV FFP were compared with RNAlater-treated plasma and dried plasma spots (DPSs) after incubation at 37 degrees C, which was chosen as an upper limit of ambient shipping temperature, for up to 28 days. HCV-infected chimpanzee plasma was shipped at either room temperature after RNAlater treatment or as frozen plasma in liquid nitrogen from Liberia to New York City. They were then compared for HCV RNA levels. The nucleic acid stabilities were determined by quantitative PCR by using a molecular beacon assay on a sequence detection system (ABI 7700, PE-Biosystems) and by visualizing the PCR components on an acrylamide gel.


RESULTS
Quantitative PCR data showed that a 60:40 or greater ratio of RNAlater:plasma volume successfully stabilized HCV RNA and HIV RNA in plasma for up to 28 days at 37 degrees C. HBV DNA in plasma was stable for up to 14 days at 37 degrees C without any stabilizing solution. DPSs on filter paper stabilized viral nucleic acids, but the recoveries were 3 to 10 times less than those with frozen plasma. The integrity of the 5' UTR region of HCV RNA in RNA later-treated chimpanzee plasma was intact when its PCR component was viewed on an acrylamide gel.


CONCLUSIONS
The DPS method stabilized nucleic acids, at least with the extraction method used, was less sensitive than use of RNAlater, and required tedious manual handling. RNAlater provides a convenient way of stabilizing viral nucleic acid in plasma at ambient temperature during sample transportation.
Lee
Dong-Hun
DH
Laboratory of Virology, The Lindsley F. Kimball Research Institute of The New York Blood Center, New York 10021, USA.
Li
Liping
L
Andrus
Linda
L
Prince
Alfred M
AM
D020121:5' Untranslated Regions; D000818:Animals; D001771:Blood Banks; D001782:Blood Donors; D004279:DNA, Viral / Q000097:blood*; D004355:Drug Stability; D006678:HIV / Q000235:genetics; D016174:Hepacivirus / Q000235:genetics; D006515:Hepatitis B virus / Q000235:genetics; D006801:Humans; D002679:Pan troglodytes / Q000097:blood; D016133:Polymerase Chain Reaction; D011786:Quality Control; D012367:RNA, Viral / Q000097:blood*; D012996:Solutions; D013048:Specimen Handling / Q000379:methods*; D013997:Time Factors
D020121:5' Untranslated Regions; D004279:DNA, Viral; D012367:RNA, Viral; D012996:Solutions