X-ray-induced debromination of nucleic acids at the Br K absorption edge and implications for MAD phasing.
Multi-wavelength anomalous dispersion (MAD) using brominated derivatives is considered a common and convenient technique for solving chemically synthesized nucleic acid structures. Here, it is shown that a relatively moderate X-ray dose (of the order of 5 x 10(15) photons mm(-2)) can induce sufficient debromination to prevent structure determination. The decrease in bromine occupancy with radiation dose can be accounted for by a simple exponential, with an estimated rate constant at the absorption-peak wavelength, 7.4 (0.8) MGy, that is not significantly different from its value at the absorption-edge wavelength, 9.2 (2.6) MGy (the given e.s.d.s assess the relative closeness of the two values, not their absolute accuracy, which is probably worse). Chemically, these results (and others) are consistent with bromine cleavage resulting from direct photodissociation and/or from the action of free electrons, rather than from the action of hydroxyl radicals originating from water dissociation. The free bromine species (Br(-)) diffuse too quickly, even in amorphous ice around 100 K, to allow the determination of a diffusion coefficient. From a practical point of view, it is suggested that a single data collection with a crystal consisting of iodinated instead of brominated derivatives could provide both anomalous scattering and SIR phase information by the progressive cleavage of iodine.
Ennifar
E
E
UPR 9002 du CNRS, IBMC, 15 Rue R. Descartes, 67084 Strasbourg CEDEX, France.
Carpentier
P
P
Ferrer
J L
JL
Walter
P
P
Dumas
P
P
D001966:Bromine / Q000737:chemistry / Q000528:radiation effects; D018360:Crystallography, X-Ray; D015497:HIV-1 / Q000737:chemistry; D015394:Molecular Structure; D009696:Nucleic Acids / Q000737:chemistry* / Q000528:radiation effects; D012367:RNA, Viral / Q000737:chemistry; D014965:X-Rays
D009696:Nucleic Acids; D012367:RNA, Viral; D001966:Bromine