Correlation of somatic hypermutation specificity and A-T base pair substitution errors by DNA polymerase eta during copying of a mouse immunoglobulin kappa light chain transgene.
To test the hypothesis that inaccurate DNA synthesis by mammalian DNA polymerase eta (pol eta) contributes to somatic hypermutation (SHM) of Ig genes, we measured the error specificity of mouse pol eta during synthesis of each strand of a mouse Ig kappa light chain transgene. We then compared the results to the base substitution specificity of SHM of this same gene in the mouse. The in vitro and in vivo base substitution spectra shared a number of common features. A highly significant correlation was observed for overall substitutions at A-T pairs but not for substitutions at G-C pairs. Sixteen mutational hotspots at A-T pairs observed in vivo were also found in spectra generated by mouse pol eta in vitro. The correlation was strongest for errors made by pol eta during synthesis of the non-transcribed strand, but it was also observed for synthesis of the transcribed strand. These facts, and the distribution of substitutions generated in vivo, support the hypothesis that pol eta contributes to SHM of Ig genes at A-T pairs via short patches of low fidelity DNA synthesis of both strands, but with a preference for the non-transcribed strand.
Pavlov
Youri I
YI
Laboratories of Molecular Genetics and Structural Biology, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA. pavlov@niehs.nih.gov
Rogozin
Igor B
IB
Galkin
Alexey P
AP
Aksenova
Anna Y
AY
Hanaoka
Fumio
F
Rada
Christina
C
Kunkel
Thomas A
TA
D000225:Adenine; D000818:Animals; D020029:Base Pairing / Q000235:genetics*; D001483:Base Sequence; D004259:DNA-Directed DNA Polymerase / Q000378:metabolism*; D005821:Genetic Techniques; D007145:Immunoglobulin kappa-Chains / Q000235:genetics*; D051379:Mice; D008822:Mice, Transgenic; D008969:Molecular Sequence Data; D009010:Monte Carlo Method; D027041:Somatic Hypermutation, Immunoglobulin / Q000235:genetics* / Q000276:immunology; D013941:Thymine; D014158:Transcription, Genetic / Q000235:genetics; D019076:Transgenes; D000099270:Y-Family DNA Polymerases
D000225:Adenine; D004259:DNA-Directed DNA Polymerase; D007145:Immunoglobulin kappa-Chains; D013941:Thymine; C112338:Rad30 protein; D000099270:Y-Family DNA Polymerases