mRNA processing in Dictyostelium: sequence requirements for termination and splicing.
Criteria for the identification of termination regions in Dictyostelium discoideum genes have been established and the sequence requirements for termination in 33 genes have been analyzed. A canonical hexamer signal AATAAA was present 15-30 nucleotides upstream of the cleavage site, usually a TA, and was embedded in a particularly A-rich environment. T- or GT-rich downstream elements characteristic of animal cells could not be identified. In a sample of 102 introns we have established the consensus AG/GTAAGT and ATAG/ for the 5' and 3' splice sites, respectively. Most introns are 75-150 nucleotides long and the A+T content is high (90%). A putative branch point was identified in half of the introns 20-60 nucleotides upstream of the 3' splice site and the consensus TACTAAY was derived. A polypyrimidine tract required for branching in vertebrates was not identified, but weak preference for pyrimidine was found 10-45 nucleotides upstream of the 3' splice site.
Rivero
Francisco
F
Institut für Biochemie I, Medizinische Fakultät, University of Cologne, Köln, Germany. francisco.rivero@uni-koeln.de
D000818:Animals; D001483:Base Sequence; D016384:Consensus Sequence; D004023:Dictyostelium / Q000235:genetics*; D017125:Genes, Protozoan / Q000235:genetics; D007438:Introns / Q000235:genetics; D008969:Molecular Sequence Data; D012323:RNA Processing, Post-Transcriptional; D022821:RNA Splice Sites / Q000235:genetics*; D012326:RNA Splicing / Q000235:genetics*; D012333:RNA, Messenger / Q000096:biosynthesis / Q000235:genetics* / Q000378:metabolism*; D016053:RNA, Protozoan / Q000096:biosynthesis / Q000235:genetics / Q000378:metabolism; D016415:Sequence Alignment; D012689:Sequence Homology, Nucleic Acid; D013728:Terminator Regions, Genetic / Q000235:genetics*
D022821:RNA Splice Sites; D012333:RNA, Messenger; D016053:RNA, Protozoan