PDB Goodies--a web-based GUI to manipulate the Protein Data Bank file.
PDB Goodies is a web-based graphical user interface (GUI) to manipulate the Protein Data Bank file containing the three-dimensional atomic coordinates of protein structures. The program also allows users to save the manipulated three-dimensional atomic coordinate file on their local client system. These fragments are used in various stages of structure elucidation and analysis. This software is incorporated with all the three-dimensional protein structures available in the Protein Data Bank, which presently holds approximately 18 000 structures. In addition, this program works on a three-dimensional atomic coordinate file (Protein Data Bank format) uploaded from the client machine. The program is written using CGI/PERL scripts and is platform independent. The program PDB Goodies can be accessed over the World Wide Web at http://144.16.71.11/pdbgoodies/.
Hussain
A S Z
AS
Bioinformatics Centre, Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560 012, India.
Shanthi
V
V
Sheik
S S
SS
Jeyakanthan
J
J
Selvarani
P
P
Sekar
K
K
D003196:Computer Graphics; D030562:Databases, Protein; D020407:Internet; D011506:Proteins / Q000737:chemistry; D012984:Software; D014584:User-Computer Interface
D011506:Proteins