TFBS: Computational framework for transcription factor binding site analysis.
BACKGROUND
TFBS is a set of integrated, object-oriented Perl modules for transcription factor binding site detection and analysis. It implements objects representing specificity profile matrices, binding sites and sets thereof, pattern generators, and pattern database interfaces. The modules are interoperable with the BioPerl open source system.


BACKGROUND
The module package with documentation and example scripts are available at http://forkhead.cgb.ki.se/TFBS/
Lenhard
Boris
B
Bioinformatics Unit, Center for Genomics and Bioinformatics, Karolinska Institutet, Stockholm, Sweden. Boris.Lenhard@cgb.ki.se
Wasserman
Wyeth W
WW
D001665:Binding Sites / Q000235:genetics; D004247:DNA / Q000235:genetics*; D030561:Databases, Nucleic Acid; D020407:Internet; D010363:Pattern Recognition, Automated; D011381:Programming Languages; D012045:Regulatory Sequences, Nucleic Acid / Q000235:genetics; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software; D014157:Transcription Factors / Q000235:genetics* / Q000378:metabolism; D014158:Transcription, Genetic / Q000235:genetics
D014157:Transcription Factors; D004247:DNA