CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles.
CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.
Department of Medicine, Baylor College of Medicine, One Baylor Plaza, ST-924, Houston, Texas 77030, USA. peterson@bcm.tmc.edu
Leif E
LE
Peterson
D000818:Animals; D016000:Cluster Analysis; D003627:Data Interpretation, Statistical; D020869:Gene Expression Profiling / Q000379:methods* / Q000592:standards; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods* / Q000592:standards; D025341:Principal Component Analysis; D012984:Software; D014158:Transcription, Genetic