Relative effectiveness of kinetic analysis vs single point readings for classifying environmental samples based on community-level physiological profiles (CLPP).
The relative effectiveness of average-well-color-development-normalized single-point absorbance readings (AWCD) vs the kinetic parameters mu(m), lambda, A, and integral (AREA) of the modified Gompertz equation fit to the color development curve resulting from reduction of a redox sensitive dye from microbial respiration of 95 separate sole carbon sources in microplate wells was compared for a dilution series of rhizosphere samples from hydroponically grown wheat and potato ranging in inoculum densities of 1 x 10(4)-4 x 10(6) cells ml-1. Patterns generated with each parameter were analyzed using principal component analysis (PCA) and discriminant function analysis (DFA) to test relative resolving power. Samples of equivalent cell density (undiluted samples) were correctly classified by rhizosphere type for all parameters based on DFA analysis of the first five PC scores. Analysis of undiluted and 1:4 diluted samples resulted in misclassification of at least two of the wheat samples for all parameters except the AWCD normalized (0.50 abs. units) data, and analysis of undiluted, 1:4, and 1:16 diluted samples resulted in misclassification for all parameter types. Ordination of samples along the first principal component (PC) was correlated to inoculum density in analyses performed on all of the kinetic parameters, but no such influence was seen for AWCD-derived results. The carbon sources responsible for classification differed among the variable types with the exception of AREA and A, which were strongly correlated. These results indicate that the use of kinetic parameters for pattern analysis in CLPP may provide some additional information, but only if the influence of inoculum density is carefully considered.
Garland
J L
JL
Dynamac Corporation, Kennedy Space Center, FL 32899, USA. jay.garland-1@ksc.nasa.gov
Mills
A L
AL
Young
J S
JS
D002244:Carbon; D015169:Colony Count, Microbial; D003116:Color; D017753:Ecosystem; D005069:Evaluation Studies as Topic; D008828:Microbiological Techniques; D018517:Plant Roots / Q000382:microbiology*; D012988:Soil Microbiology; D011198:Solanum tuberosum / Q000382:microbiology; D014908:Triticum / Q000382:microbiology
D002244:Carbon
NASA Center KSC; NASA Discipline Life Support Systems