title: Regulation of 3' splice site selection in the 844ins68 polymorphism of the cystathionine Beta -synthase gene.
abstract: 844ins68 is a frequent polymorphism of the cystathionine beta-synthase gene (CBS) that consists of a 68-bp insertion duplicating the 3' splice site of intron 7 and the 5'-end of exon 8. The presence of two identical 3' splice sites spaced by 68 bp should lead to either a selection of the proximal site or to at least two alternatively spliced CBS mRNA variants. Instead, an accurate selection of the distal 3' splice site is observed in the 844ins68 carriers. The duplication has generated a gene re-arrangement at the 3' splice site where two GGGG runs have been brought close to each other. Using a minigene system, we have investigated the effect this peculiar configuration might have on the selection of the 3' splice site of intron 7 in the CBS gene. Minimal disruption of the G runs resulted in a dramatic shift toward the proximal 3' splice site selection with inclusion of the 68-bp insertion and a consequent change of the reading frame. The insertional event created this peculiar configuration of two G repeats close to each other that subsequently acquired the ability to strongly bind heterogeneous nuclear ribonucleoprotein (hnRNP) H1, a specific trans-acting factor. The interaction of hnRNP H1 with G runs within the 844ins68 context might interfere with the recruitment of splicing factors to the proximal 3' splice site thus favoring the selection of the distal 3' splice site. Our results therefore suggest the possibility that the insertion was an evolutionary event that allowed the rescue of the wild-type sequence, so preserving protein function.
authors.affiliation: International Centre for Genetic Engineering and Biotechnology, Padriciano 99, Trieste I-34012, Italy.
authors.forename: Maurizio
authors.initials: M
authors.lastname: Romano
authors.forename: Roberto
authors.initials: R
authors.lastname: Marcucci
authors.forename: Emanuele
authors.initials: E
authors.lastname: Buratti
authors.forename: Youhna M
authors.initials: YM
authors.lastname: Ayala
authors.forename: Gianfranco
authors.initials: G
authors.lastname: Sebastio
authors.forename: Francisco E
authors.initials: FE
authors.lastname: Baralle
mesh_terms: D017398:Alternative Splicing; D000595:Amino Acid Sequence; D001483:Base Sequence; D003541:Cystathionine beta-Synthase / Q000096:biosynthesis* / Q000235:genetics*; D005091:Exons; D017353:Gene Deletion; D006579:Heterozygote; D006801:Humans; D007438:Introns; D008957:Models, Genetic; D008969:Molecular Sequence Data; D011110:Polymorphism, Genetic; D012313:RNA / Q000378:metabolism; D011994:Recombinant Proteins / Q000378:metabolism; D017386:Sequence Homology, Amino Acid; D012689:Sequence Homology, Nucleic Acid; D014162:Transfection; D014466:Ultraviolet Rays
chemical_list: D011994:Recombinant Proteins; D012313:RNA; D003541:Cystathionine beta-Synthase