Microarray data representation, annotation and storage.
Management and analysis of the huge amounts of data produced by microarray experiments is becoming one of the major bottlenecks in the utilization of this high-throughput technology. We describe the basic design of a microarray gene expression database to help microarray users and their informatics teams to set up their information services. We describe two data models--a simpler one called ArrayExpressB and the complete model ArrayExpressC, and discuss some implementation issues. For latest developments see http: wwwebi.ac.uk/arrayexpress
Brazma
Alvis
A
EMBL Outstation-Hinxton, European Bioinformatics Institute, Cambridge, UK. brazma@ebi.ac.uk
Sarkans
Ugis
U
Robinson
Alan
A
Vilo
Jaak
J
Vingron
Martin
M
Hoheisel
Jörg
J
Fellenberg
Kurt
K
D000465:Algorithms; D003628:Database Management Systems; D030541:Databases, Genetic; D015870:Gene Expression; D016247:Information Storage and Retrieval / Q000379:methods*; D020407:Internet; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D011786:Quality Control; D017422:Sequence Analysis, DNA / Q000379:methods*; D012985:Software Design