OrthoGUI: graphical presentation of Orthostrapper results.
CONCLUSIONS
Orthostrapper is a program that calculates orthology support values for pairs of sequences in a multiple alignment (Storm and Sonnhammer, Bioinformatics, 18, 92-99, 2002). Here we present OrthoGUI, a web interface and display tool for Orthostrapper analysis. OrthoGUI visualizes the Orthostrapper output in both tabular and tree representations, and can also apply a clustering algorithm to identify groups of multiple orthologs, which are indicated by colour coding.


BACKGROUND
http://www.cgb.ki.se/OrthoGUI CONTACT: erik.sonnhammer@cgb.ki.se
Hollich
Volker
V
Center for Genomics and Bioinformatics, Karolinska Institutet, SE-171 77 Stockholm, Sweden.
Storm
Christian E V
CE
Sonnhammer
Erik L L
EL
D018528:ATP-Binding Cassette Transporters / Q000235:genetics / Q000378:metabolism; D000255:Adenosine Triphosphate / Q000378:metabolism; D000465:Algorithms; D003196:Computer Graphics; D003626:Data Display; D030562:Databases, Protein; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods*; D020407:Internet; D011485:Protein Binding / Q000235:genetics; D012680:Sensitivity and Specificity; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*; D017385:Sequence Homology; D013045:Species Specificity; D014584:User-Computer Interface
D018528:ATP-Binding Cassette Transporters; D000255:Adenosine Triphosphate