Computational analysis of crystallization trials.
A system for the automatic categorization of the results of crystallization experiments generated by robotic screening is presented. Images from robotically generated crystallization screens are taken at preset time intervals and analyzed by the computer program Crystal Experiment Evaluation Program (CEEP). This program attempts to automatically categorize the individual crystal experiments into a number of simple classes ranging from clear drop to mountable crystal. The algorithm first selects features from the images via edge detection and texture analysis. Classification is achieved via a self-organizing neural net generated from a set of hand-classified images used as a training set. New images are then classified according to this neural net. It is demonstrated that incorporation of time-series information may enhance the accuracy of classification. Preliminary results from the screening of the proteome of Thermotoga maritima are presented showing the utility of the system.
Spraggon
Glen
G
Genomics Institute of the Novartis Research Foundation, 10675 John Jay Hopkins Drive, La Jolla CA 92121, USA. spraggon@gnf.org
Lesley
Scott A
SA
Kreusch
Andreas
A
Priestle
John P
JP
D000465:Algorithms; D001426:Bacterial Proteins / Q000737:chemistry* / Q000235:genetics; D003460:Crystallization / Q000379:methods*; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D016571:Neural Networks, Computer; D020543:Proteome / Q000737:chemistry*; D012680:Sensitivity and Specificity; D012984:Software; D013223:Statistics as Topic; D020124:Thermotoga maritima / Q000737:chemistry* / Q000235:genetics; D013997:Time Factors
D001426:Bacterial Proteins; D020543:Proteome