title: Noninvasive diagnosis of BK virus nephritis by measurement of messenger RNA for BK virus VP1 in urine.
abstract: BACKGROUND
  Polyoma virus type BK (BKV) nephritis has emerged as an important cause of renal allograft dysfunction and graft failure. Its diagnosis is contingent on the invasive procedure of allograft biopsy. A noninvasive diagnostic test for BKV nephritis could improve clinical outcome.
  
  
  METHODS
  We obtained 25 urine specimens from 8 renal allograft recipients with biopsy-confirmed BKV nephritis, 31 samples from 28 recipients in whom BKV nephritis was excluded by allograft biopsy, and 74 specimens from 34 patients with stable allograft function. RNA was isolated from the urinary cells and reverse transcribed to complementary DNA. We designed gene-specific oligonucleotide primers and probes for the measurement of messenger RNA (mRNA) encoding BKV VP1 protein and a constitutively expressed 18S ribosomal RNA (rRNA) by real-time quantitative polymerase chain reaction. We explored the hypothesis that BKV VP1 mRNA levels predict BKV nephritis.
  
  
  RESULTS
  The levels of BKV VP1 mRNA but not the levels of 18S rRNA predicted BKV nephritis. Analysis involving the receiver operating characteristic curve demonstrated that BKV nephritis can be predicted with a sensitivity of 93.8% and a specificity of 93.9% with the use of a cutoff value of 6.5 x 10 BKV VP1 mRNA copy number per nanogram of total RNA ( <0.00001). In the receiver operating characteristic curve analysis, the calculated area under the curve was 0.949 (95% confidence interval, 0.912 to 0.987, <0.00001) for BKV VP1 mRNA levels and 0.562 (95% confidence interval, 0.417 to 0.708, >0.2) for 18S rRNA.
  
  
  CONCLUSIONS
  Measurement of BKV VP1 mRNA in urinary cells offers a noninvasive and accurate means of diagnosing BKV nephritis.
authors.affiliation: Division of Nephrology, Departments of Medicine and Transplantation Medicine, Weill Medical College of Cornell University, New York-Presbyterian Hospital, New York, NY 10021, USA. msuthan@med.cornell.edu
authors.forename: Ruchuang
authors.initials: R
authors.lastname: Ding
authors.forename: Mara
authors.initials: M
authors.lastname: Medeiros
authors.forename: Darshana
authors.initials: D
authors.lastname: Dadhania
authors.forename: Thangamani
authors.initials: T
authors.lastname: Muthukumar
authors.forename: David
authors.initials: D
authors.lastname: Kracker
authors.forename: Jin M
authors.initials: JM
authors.lastname: Kong
authors.forename: Susanna R
authors.initials: SR
authors.lastname: Epstein
authors.forename: Vijay K
authors.initials: VK
authors.lastname: Sharma
authors.forename: Surya V
authors.initials: SV
authors.lastname: Seshan
authors.forename: Baogui
authors.initials: B
authors.lastname: Li
authors.forename: Manikkam
authors.initials: M
authors.lastname: Suthanthiran
mesh_terms: D000328:Adult; D001739:BK Virus / Q000235:genetics*; D002213:Capsid / Q000502:physiology*; D036022:Capsid Proteins; D004279:DNA, Viral / Q000652:urine*; D005260:Female; D006801:Humans; D008297:Male; D008875:Middle Aged; D009393:Nephritis / Q000652:urine / Q000821:virology*; D027601:Polyomavirus Infections / Q000175:diagnosis* / Q000652:urine; D012372:ROC Curve; D014412:Tumor Virus Infections / Q000175:diagnosis* / Q000652:urine; D014556:Urine / Q000166:cytology
chemical_list: D036022:Capsid Proteins; D004279:DNA, Viral; C062481:VP1 protein, polyomavirus