GENOTRACE: cDNA-based local GENOme assembly from TRACE archives.
GENOTRACE identifies the genomic organization for a cDNA using raw data from genome sequencing projects in progress (trace archives). Local genomic contigs are generated, allowing for example the design of PCR primers in intronic sequences to amplify coding regions of a gene, needed for example for mutation or SNP detection.


BACKGROUND
The package and examples of output files can be downloaded from http://rat.niob.knaw.nl/GENOTRACE
Berezikov
Eugene
E
Hubrecht Laboratory, Netherlands Institute for Developmental Biology, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands.
Plasterk
Ronald H A
RH
Cuppen
Edwin
E
D001109:Archives; D002874:Chromosome Mapping / Q000379:methods; D018076:DNA, Complementary / Q000235:genetics*; D003628:Database Management Systems; D030561:Databases, Nucleic Acid; D019146:Hypermedia; D016247:Information Storage and Retrieval / Q000379:methods*; D020407:Internet; D009317:National Library of Medicine (U.S.); D017422:Sequence Analysis, DNA / Q000379:methods; D012984:Software; D012985:Software Design; D014481:United States
D018076:DNA, Complementary