title: Cleavable substrate containing molecular beacons for the quantification of DNA-photolyase activity.
abstract: In order to gain deeper insight into the function and interplay of proteins in cells it is essential to develop methods that allow the profiling of protein function in real time, in solution, in cells, and in cell organelles. Here we report the development of a U-type oligonucleotide (molecular beacon) that contains a fluorophore and a quencher at the tips, and in addition a substrate analogue in the loop structure. This substrate analogue induces a hairpin cleavage in response to enzyme action, which is translated into a fluorescence signal. The molecular beacon developed here was used to characterize DNA-photolyase activity. These enzymes represent a challenge for analytical methods because of their low abundance in cells. The molecular beacon made it possible to measure the activity of purified class I and class II photolyases. Photolyase activity was even detectable in crude cell extracts.
authors.affiliation: Fachbereich Chemie, Philipps-Universität Marburg Hans-Meerwein-Strasse, 35032 Marburg, Germany.
authors.forename: Lal Mohan
authors.initials: LM
authors.lastname: Kundu
authors.forename: Lars T
authors.initials: LT
authors.lastname: Burgdorf
authors.forename: Oliver
authors.initials: O
authors.lastname: Kleiner
authors.forename: Alfred
authors.initials: A
authors.lastname: Batschauer
authors.forename: Thomas
authors.initials: T
authors.lastname: Carell
mesh_terms: D004260:DNA Repair; D004255:Deoxyribodipyrimidine Photo-Lyase / Q000378:metabolism*; D015335:Molecular Probes / Q000138:chemical synthesis*; D009690:Nucleic Acid Conformation; D009841:Oligonucleotides / Q000138:chemical synthesis
chemical_list: D015335:Molecular Probes; D009841:Oligonucleotides; D004255:Deoxyribodipyrimidine Photo-Lyase