title: Integration host factor is essential for the optimal expression of the styABCD operon in Pseudomonas fluorescens ST.
abstract: The StyS/StyR two-component regulatory system of Pseudomonas fluorescens ST controls the expression of the styABCD operon coding for the styrene degradation upper pathway. In a previous work we showed that the promoter of the catabolic operon (PstyA) is induced by styrene and repressed to differing extents by organic acids or carbohydrates. In order to study the mechanisms controlling the expression of this operon, we performed a functional analysis on 5' deletions of PstyA by the use of a promoter-probe system. These studies demonstrated that a palindromic region (sty box), located from nucleotides -52 to -37 with respect to the transcriptional start point is essential for PstyA activity. Moreover, additional regulatory regions involved in the modulation of PstyA activity were found along the promoter sequence. In particular, deletion of a putative StyR binding site, homologous to the 3' half of the sty box and located upstream of this box, resulted in 65% reduction of the induction level of the reporter gene. Additionally, we performed bandshift assays with a DNA probe corresponding to PstyA and protein crude extracts from P. fluorescens ST, using specific DNA fragments as competitors. In these experiments we demonstrated that IHF binds an AT-rich region located upstream of the sty box. On the basis of this finding, coupled with the results obtained with PstyA functional analysis, we suggest that the role of the IHF-mediated DNA bend is to bring closer, in an overlapping position, the upstream StyR putative binding site and the downstream sty box, and that the formed complex enhances transcription.
authors.affiliation: Department of Biology, Third University of Rome, Italy.
authors.forename: Pedro Miguel
authors.initials: PM
authors.lastname: Santos
authors.forename: Livia
authors.initials: L
authors.lastname: Leoni
authors.forename: Ilaria
authors.initials: I
authors.lastname: Di Bartolo
authors.forename: Elisabetta
authors.initials: E
authors.lastname: Zennaro
mesh_terms: D001426:Bacterial Proteins / Q000502:physiology; D024202:Electrophoretic Mobility Shift Assay; D015964:Gene Expression Regulation, Bacterial; D000071677:Histidine Kinase; D034982:Integration Host Factors / Q000235:genetics / Q000502:physiology*; D009876:Operon; D011401:Promoter Regions, Genetic; D011494:Protein Kinases / Q000502:physiology; D011551:Pseudomonas fluorescens / Q000235:genetics* / Q000254:growth & development / Q000378:metabolism; D013343:Styrenes / Q000378:metabolism; D014158:Transcription, Genetic; D001616:beta-Galactosidase / Q000378:metabolism
chemical_list: D001426:Bacterial Proteins; D034982:Integration Host Factors; C110964:StyR protein, Pseudomonas; D013343:Styrenes; D011494:Protein Kinases; D000071677:Histidine Kinase; D001616:beta-Galactosidase