title: Expression profiling of liver cell lines expressing entire or parts of hepatitis C virus open reading frame.
abstract: Although hepatitis C virus (HCV) is a causative agent of liver diseases, its mechanism of pathogenesis is still unclear, mainly because of the lack of adequate cell culture systems to support HCV infection and replication. In this report, we describe development and characterization of human hepatoma cell lines constitutively expressing entire (Hep394) or parts (Hep352, Hep3294) of the HCV open reading frame (ORF). The viral and cellular proteolytic machinery involved in the viral precursor processing was consistently functional, and processed HCV proteins were synthesized in these established cell lines. By using a cDNA microarray analysis coupled with semiquantitative reverse-transcription polymerase chain reaction (RT-PCR), we identified 12 genes up-regulated and 4 genes down-regulated in Hep394 cells. With regard to genes related to cell growth regulation, we found up-regulation of forkhead transcription factor FREAC-1, poly (A) binding protein PABP2, and Ras suppressor Rsu-1. Another category of changes in gene expression includes MHC antigens, which play an important role in the T-cell-mediated immune reaction in the liver. In conclusion, functional genomic approaches comparing expression among the different cell lines expressing parts of the HCV genome may promote our understanding of the molecular basis of pathogenicity of HCV infection.
authors.affiliation: Department of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
authors.forename: Hideki
authors.initials: H
authors.lastname: Aizaki
authors.forename: Takashi
authors.initials: T
authors.lastname: Harada
authors.forename: Motoyuki
authors.initials: M
authors.lastname: Otsuka
authors.forename: Naohiko
authors.initials: N
authors.lastname: Seki
authors.forename: Mami
authors.initials: M
authors.lastname: Matsuda
authors.forename: Yue Wei
authors.initials: YW
authors.lastname: Li
authors.forename: Hayato
authors.initials: H
authors.lastname: Kawakami
authors.forename: Yoshiharu
authors.initials: Y
authors.lastname: Matsuura
authors.forename: Tatsuo
authors.initials: T
authors.lastname: Miyamura
authors.forename: Tetsuro
authors.initials: T
authors.lastname: Suzuki
mesh_terms: D006528:Carcinoma, Hepatocellular; D004268:DNA-Binding Proteins / Q000235:genetics; D051858:Forkhead Transcription Factors; D015870:Gene Expression; D020869:Gene Expression Profiling; D016174:Hepacivirus / Q000235:genetics*; D006801:Humans; D008113:Liver Neoplasms; D016366:Open Reading Frames; D039103:Poly(A)-Binding Protein II / Q000235:genetics; D020133:Reverse Transcriptase Polymerase Chain Reaction; D015534:Trans-Activators / Q000235:genetics; D014157:Transcription Factors / Q000235:genetics; D014407:Tumor Cells, Cultured
chemical_list: D004268:DNA-Binding Proteins; C098521:FOXF1 protein, human; D051858:Forkhead Transcription Factors; D039103:Poly(A)-Binding Protein II; D015534:Trans-Activators; D014157:Transcription Factors; C076224:RSU1 protein, human