title: Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria.
abstract: Thiamin and riboflavin are precursors of essential coenzymes-thiamin pyrophosphate (TPP) and flavin mononucleotide (FMN)/flavin adenine dinucleotide (FAD), respectively. In Bacillus spp, genes responsible for thiamin and riboflavin biosynthesis are organized in tightly controllable operons. Here, we demonstrate that the feedback regulation of riboflavin and thiamin genes relies on a novel transcription attenuation mechanism. A unique feature of this mechanism is the formation of specific complexes between a conserved leader region of the cognate RNA and FMN or TPP. In each case, the complex allows the termination hairpin to form and interrupt transcription prematurely. Thus, sensing small molecules by nascent RNA controls transcription elongation of riboflavin and thiamin operons and possibly other bacterial operons as well.
authors.affiliation: State Research Institute of Genetics and Selection of Industrial Microorganisms, 113545, Moscow, Russia.
authors.forename: Alexander S
authors.initials: AS
authors.lastname: Mironov
authors.forename: Ivan
authors.initials: I
authors.lastname: Gusarov
authors.forename: Ruslan
authors.initials: R
authors.lastname: Rafikov
authors.forename: Lubov Errais
authors.initials: LE
authors.lastname: Lopez
authors.forename: Konstantin
authors.initials: K
authors.lastname: Shatalin
authors.forename: Rimma A
authors.initials: RA
authors.lastname: Kreneva
authors.forename: Daniel A
authors.initials: DA
authors.lastname: Perumov
authors.forename: Evgeny
authors.initials: E
authors.lastname: Nudler
mesh_terms: D001412:Bacillus subtilis / Q000187:drug effects / Q000235:genetics / Q000254:growth & development; D001419:Bacteria / Q000235:genetics*; D001483:Base Sequence; D017124:Conserved Sequence; D005486:Flavin Mononucleotide / Q000378:metabolism; D005182:Flavin-Adenine Dinucleotide / Q000378:metabolism; D015964:Gene Expression Regulation, Bacterial; D066298:In Vitro Techniques; D008957:Models, Genetic; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D016376:Oligonucleotides, Antisense / Q000494:pharmacology; D009876:Operon; D017354:Point Mutation; D012329:RNA, Bacterial; D012256:Riboflavin / Q000096:biosynthesis / Q000378:metabolism; D017384:Sequence Deletion; D013831:Thiamine / Q000096:biosynthesis / Q000378:metabolism; D014158:Transcription, Genetic
chemical_list: D016376:Oligonucleotides, Antisense; D012329:RNA, Bacterial; D005182:Flavin-Adenine Dinucleotide; D005486:Flavin Mononucleotide; D012256:Riboflavin; D013831:Thiamine