title: Neutral versus charged species in enzyme catalysis. Classical and free energy barriers for oxygen atom transfer from C4a-hydroperoxyflavin to dimethyl sulfide.
abstract: Theoretical calculations at the B3LYP/6-31+G(d,p) level have been used to study the oxidation of dimethyl sulfide by a series of bicyclic and tricyclic model C4a-flavin hydroperoxides. The intrinsic gas-phase reactivity of tricyclic C4a-hydroperoxyflavin 4 is ca. 10(9) greater than t-BuOOH but is ca. 10(7) less reactive toward the oxidation of dimethyl sulfide than peroxyformic acid. The SN2-like attack of the nucleophile on the distal oxygen of the hydroperoxide and the relative reactivity of the peracid are in excellent agreement with the earlier experimental data of Bruice. The effect of N1 or N5 hydrogen-bonding interactions on the activation barriers for oxygen atom transfer have been examined. Classical energy barriers for oxygen atom transfer from neutral and ion-paired forms of C4a-hydroperoxyflavin to dimethyl sulfide are predicted to differ by a small margin, suggesting that proton distribution exerts a relatively small influence on the reactivity of alkyl hydroperoxides. Isolated N1- and N5-protonated cations exhibit artificially low barriers as a consequence of their location in a high energy region of the potential energy surface domain.
authors.affiliation: Dipartimento di Chimica Generale e Organica Applicata, Università di Torino, Corso Massimo d'Azeglio 48, 10125 Torino, Italy. carlo.canepa@unito.it
authors.forename: Carlo
authors.initials: C
authors.lastname: Canepa
authors.forename: Robert D
authors.initials: RD
authors.lastname: Bach
authors.forename: Olga
authors.initials: O
authors.lastname: Dmitrenko
mesh_terms: D002384:Catalysis; D004121:Dimethyl Sulfoxide; D004798:Enzymes / Q000378:metabolism*; D005415:Flavins / Q000737:chemistry*; D006860:Hydrogen Bonding; D008962:Models, Theoretical; D008968:Molecular Conformation; D015394:Molecular Structure; D010084:Oxidation-Reduction; D010100:Oxygen / Q000737:chemistry*; D011522:Protons
chemical_list: D004798:Enzymes; D005415:Flavins; D011522:Protons; D010100:Oxygen; D004121:Dimethyl Sulfoxide