Structural plasticity of thermophilic serine hydroxymethyltransferases.
Serine hydroxymethyltransferase (SHMT) catalyzes the reversible cleavage of serine to form glycine and monocarbonic groups, essential in several biosynthetic pathways. The availability of crystallographic structures of SHMT from mesophilic organisms and information produced by the genomic projects prompted the analysis of the adaptation of SHMT to "extreme" environments, such as high temperatures, by exploitation of structural data from thermophilic organisms. The sequences of 10 thermophilic/hyperthermophilic SHMTs were multiply aligned to 53 mesophilic homologs and analyzed by a comparative approach, examining the amino acid compositions and preferred residue exchanges between mesophiles and extremophiles. The structural basis of the observed exchanges was further investigated through the application of homology modeling to the 10 extremophilic SHMTs. The results of this study indicate that, in SHMT, thermal stability can be achieved mainly through three strategies: (i) increased number of charged residues at the protein surface; (ii) increased hydrophobicity of the protein core; and (iii) substitution of thermolabile residues exposed to the solvent. Additional features of the archaeal SHMTs, for which no structural data are available yet, were also investigated to explain their quaternary assemblage and the interaction with modified folates.
Paiardini
Alessandro
A
Dipartimento di Scienze Biochimiche A. Rossi Fanelli and Centro di Biologia Molecolare del Consiglio Nazionale delle Ricerche, Università La Sapienza, Rome, Italy.
Gianese
Giulio
G
Bossa
Francesco
F
Pascarella
Stefano
S
D000595:Amino Acid Sequence; D019943:Amino Acid Substitution; D000818:Animals; D001105:Archaea / Q000201:enzymology; D004795:Enzyme Stability; D004926:Escherichia coli / Q000201:enzymology; D005492:Folic Acid / Q000378:metabolism; D012696:Glycine Hydroxymethyltransferase / Q000737:chemistry* / Q000235:genetics; D006358:Hot Temperature; D006801:Humans; D057927:Hydrophobic and Hydrophilic Interactions; D008958:Models, Molecular; D008969:Molecular Sequence Data; D020836:Protein Structure, Quaternary; D011817:Rabbits; D016415:Sequence Alignment; D020539:Sequence Analysis, Protein; D017386:Sequence Homology, Amino Acid
D005492:Folic Acid; D012696:Glycine Hydroxymethyltransferase