Catalysis at a dinuclear [CuSMo(==O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution.
The CO dehydrogenase of the eubacterium Oligotropha carboxidovorans is a 277-kDa Mo- and Cu-containing iron-sulfur flavoprotein. Here, the enzyme's active site in the oxidized or reduced state, after inactivation with potassium cyanide or with n-butylisocyanide bound to the active site, has been reinvestigated by multiple wavelength anomalous dispersion measurements at atomic resolution, electron spin resonance spectroscopy, and chemical analyses. We present evidence for a dinuclear heterometal [CuSMoO)OH] cluster in the active site of the oxidized or reduced enzyme, which is prone to cyanolysis. The cluster is coordinated through interactions of the Mo with the dithiolate pyran ring of molybdopterin cytosine dinucleotide and of the Cu with the Sgamma of Cys-388, which is part of the active-site loop VAYRC(388)SFR. The previously reported active-site structure [Dobbek, H., Gremer, L., Meyer, O. & Huber, R. (1999) Proc. Natl. Acad. Sci. USA 96, 8884-8889] of an Mo with three oxygen ligands and an SeH-group bound to the Sgamma atom of Cys-388 could not be confirmed. The structure of CO dehydrogenase with the inhibitor n-butylisocyanide bound has led to a model for the catalytic mechanism of CO oxidation which involves a thiocarbonate-like intermediate state. The dinuclear [CuSMo(O)OH] cluster of CO dehydrogenase establishes a previously uncharacterized class of dinuclear molybdoenzymes containing the pterin cofactor.
Dobbek
Holger
H
Abteilung Strukturforschung, Max-Planck-Institut für Biochemie, and Proteros Biostructures GmbH, D-82152 Martinsried, Germany Europe. dobbek@biochem.mpg.de
Gremer
Lothar
L
Kiefersauer
Reiner
R
Huber
Robert
R
Meyer
Ortwin
O
D000445:Aldehyde Oxidoreductases / Q000037:antagonists & inhibitors / Q000737:chemistry / Q000378:metabolism*; D020561:Alphaproteobacteria / Q000201:enzymology; D001426:Bacterial Proteins / Q000037:antagonists & inhibitors / Q000737:chemistry / Q000378:metabolism*; D001665:Binding Sites; D002384:Catalysis; D003067:Coenzymes; D003300:Copper / Q000737:chemistry; D004578:Electron Spin Resonance Spectroscopy; D004791:Enzyme Inhibitors / Q000494:pharmacology; D008667:Metalloproteins / Q000737:chemistry; D008958:Models, Molecular; D008982:Molybdenum / Q000737:chemistry; D000090006:Molybdenum Cofactors; D009097:Multienzyme Complexes / Q000037:antagonists & inhibitors / Q000737:chemistry / Q000378:metabolism*; D009570:Nitriles / Q000737:chemistry / Q000494:pharmacology; D010084:Oxidation-Reduction; D011190:Potassium Cyanide / Q000494:pharmacology; D011621:Pteridines / Q000737:chemistry; D012643:Selenium / Q000737:chemistry; D013329:Structure-Activity Relationship; D013455:Sulfur / Q000737:chemistry
D000445:Aldehyde Oxidoreductases; D001426:Bacterial Proteins; D003067:Coenzymes; D003300:Copper; D004791:Enzyme Inhibitors; D008667:Metalloproteins; D008982:Molybdenum; D000090006:Molybdenum Cofactors; D009097:Multienzyme Complexes; D009570:Nitriles; D011190:Potassium Cyanide; D011621:Pteridines; D012643:Selenium; D013455:Sulfur; C002990:butyl isocyanide; C022261:molybdopterin; C019823:carbon monoxide dehydrogenase