Fragmentation pathway studies of oligonucleotides in matrix-assisted laser desorption/ionization mass spectrometry by charge tagging and H/D exchange.
The desorption and decompositions of synthesized oligonucleotides bearing fixed charge sites have been investigated by linear, delayed-extraction, reflecting and post-source decay mode matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. In contrast to the conventional [M + H]+ forms of unmodified molecules where a proton is likely attached to a nucleobase, here the charge is fixed at one of the termini. In this case the observed fragment ions always incorporate the charge-tag. H/D exchange experiments provide no evidence for intramolecular migration of protons on the phosphate backbone to initiate the fragmentation event. New unique pathways of proton migration from the ribose have been elucidated and are rationalized by a charge-remote fragmentation pathway.
Chou
Chau-Wen
CW
Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana, USA. cchou@uno.edu
Limbach
Patrick A
PA
Cole
Richard B
RB
D003903:Deuterium; D006859:Hydrogen; D007202:Indicators and Reagents; D009841:Oligonucleotides / Q000737:chemistry*; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; D009626:Terminology as Topic
D007202:Indicators and Reagents; D009841:Oligonucleotides; D006859:Hydrogen; D003903:Deuterium