The Proteome Analysis database: a tool for the in silico analysis of whole proteomes.
The Proteome Analysis database (http://www.ebi.ac.uk/proteome/) has been developed by the Sequence Database Group at EBI utilizing existing resources and providing comparative analysis of the predicted protein coding sequences of the complete genomes of bacteria, archeae and eukaryotes. Three main projects are used, InterPro, CluSTr and GO Slim, to give an overview on families, domains, sites, and functions of the proteins from each of the complete genomes. Complete proteome analysis is available for a total of 89 proteome sets. A specifically designed application enables InterPro proteome comparisons for any one proteome against any other one or more of the proteomes in the database.
Pruess
Manuela
M
EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK. mpr@ebi.ac.uk
Fleischmann
Wolfgang
W
Kanapin
Alexander
A
Karavidopoulou
Youla
Y
Kersey
Paul
P
Kriventseva
Evgenia
E
Mittard
Virginie
V
Mulder
Nicola
N
Phan
Isabelle
I
Servant
Florence
F
Apweiler
Rolf
R
D000818:Animals; D019843:Archaeal Proteins / Q000737:chemistry; D001426:Bacterial Proteins / Q000737:chemistry; D003627:Data Interpretation, Statistical; D030562:Databases, Protein; D006801:Humans; D051379:Mice; D011506:Proteins / Q000737:chemistry / Q000145:classification / Q000502:physiology; D020543:Proteome / Q000737:chemistry* / Q000502:physiology; D020539:Sequence Analysis, Protein; D017386:Sequence Homology, Amino Acid
D019843:Archaeal Proteins; D001426:Bacterial Proteins; D011506:Proteins; D020543:Proteome