title: The Proteome Analysis database: a tool for the in silico analysis of whole proteomes.
abstract: The Proteome Analysis database (http://www.ebi.ac.uk/proteome/) has been developed by the Sequence Database Group at EBI utilizing existing resources and providing comparative analysis of the predicted protein coding sequences of the complete genomes of bacteria, archeae and eukaryotes. Three main projects are used, InterPro, CluSTr and GO Slim, to give an overview on families, domains, sites, and functions of the proteins from each of the complete genomes. Complete proteome analysis is available for a total of 89 proteome sets. A specifically designed application enables InterPro proteome comparisons for any one proteome against any other one or more of the proteomes in the database.
authors.affiliation: EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK. mpr@ebi.ac.uk
authors.forename: Manuela
authors.initials: M
authors.lastname: Pruess
authors.forename: Wolfgang
authors.initials: W
authors.lastname: Fleischmann
authors.forename: Alexander
authors.initials: A
authors.lastname: Kanapin
authors.forename: Youla
authors.initials: Y
authors.lastname: Karavidopoulou
authors.forename: Paul
authors.initials: P
authors.lastname: Kersey
authors.forename: Evgenia
authors.initials: E
authors.lastname: Kriventseva
authors.forename: Virginie
authors.initials: V
authors.lastname: Mittard
authors.forename: Nicola
authors.initials: N
authors.lastname: Mulder
authors.forename: Isabelle
authors.initials: I
authors.lastname: Phan
authors.forename: Florence
authors.initials: F
authors.lastname: Servant
authors.forename: Rolf
authors.initials: R
authors.lastname: Apweiler
mesh_terms: D000818:Animals; D019843:Archaeal Proteins / Q000737:chemistry; D001426:Bacterial Proteins / Q000737:chemistry; D003627:Data Interpretation, Statistical; D030562:Databases, Protein; D006801:Humans; D051379:Mice; D011506:Proteins / Q000737:chemistry / Q000145:classification / Q000502:physiology; D020543:Proteome / Q000737:chemistry* / Q000502:physiology; D020539:Sequence Analysis, Protein; D017386:Sequence Homology, Amino Acid
chemical_list: D019843:Archaeal Proteins; D001426:Bacterial Proteins; D011506:Proteins; D020543:Proteome