Effect of solvent on an NMR chemical shift difference between glycyl geminal alpha-protons as a probe of beta-turn formation of short peptides.
Proton NMR spectra of short peptides with a glycyl (Gly) or N-methylglycyl (sarcosyl, Sar) residue were measured in various mixed solvents with a wide range of dielectric constants: 78.3-2.3. From analyses of the octet and quartet signals of the geminal alpha-protons of Gly and Sar residues, respectively, we have estimated chemical shift differences between the two alpha-protons, Delta delta(alpha/alpha'). It is found that the Delta delta(alpha/alpha') values increase with decreasing solvent polarity and the increasing rates depend significantly on amino acid sequences. By referring to infrared spectra and chemical shift of the terminal NH protons, deltaNH, of the peptides, the Delta delta(alpha/alpha') values were found to be a good probe of beta-turn formation. From solvent-dependent change of Delta delta(alpha/alpha'), we estimated the free energies for the beta-turn formation and compared the results with those estimated from deltaNH. Using the resulting free energies, we have discussed effects of solvent on the beta-turn formation.
Tonan
Kenji
K
Division of Chemistry, Graduate School of Science, Hokkaido University, Sapporo 060-0810, Japan.
Ikawa
Shun-ichi
S
D019277:Entropy; D006860:Hydrogen Bonding; D009682:Magnetic Resonance Spectroscopy / Q000379:methods*; D008956:Models, Chemical; D010455:Peptides / Q000737:chemistry*; D011522:Protons; D013055:Spectrophotometry, Infrared / Q000379:methods*; D013696:Temperature; D013816:Thermodynamics
D010455:Peptides; D011522:Protons