Detection of hydrogen-bond signature patterns in protein families.
CONCLUSIONS
We have developed a WWW server, HBPRINT, for the identification of hydrogen-bond signature patterns in protein families from their structures. The server calculates (a) common hydrogen bonds between two structures (b) a hydrogen-bond fingerprint in a set of structural neighbours and (c) details of conserved hydrogen bonds. The server also enables the visualization of the hydrogen bond network comprising the signature pattern.


BACKGROUND
HBPRINT and a tutorial are available from http://144.16.93.115/hb_page/index.html.
Prasad
Tejasvini
T
Bioinformatics Centre, Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560012, India.
Prathima
M N
MN
Chandra
Nagasuma
N
D000465:Algorithms; D017124:Conserved Sequence / Q000235:genetics*; D005737:Garlic / Q000737:chemistry; D006860:Hydrogen Bonding; D020407:Internet; D037121:Plant Lectins / Q000737:chemistry / Q000235:genetics; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry* / Q000145:classification / Q000235:genetics; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods; D014584:User-Computer Interface
D037121:Plant Lectins; D011506:Proteins