title: Altered splicing pattern of TACC1 mRNA in gastric cancer.
abstract: Transforming acidic coiled-coil (TACC) proteins are centrosome and microtubule-associated proteins that are essential for mitotic spindle function. We identified TACC1 as an immunogenic protein and a potential tumor antigen by applying serological identification of antigens by recombinant expression cloning (SEREX) technique to screen a gastric cancer cDNA library. The 5'RLM-RACE and reverse transcriptase polymerase chain reaction analyses revealed at least six different transcript variants of TACC1 with variable transcription start sites and alternative exon usage (designated TACC1-A-TACC1-F). All transcripts differ in their 5' ends but share an identical 3' region encoding coiled-coil domain. Four transcripts were universally expressed in all normal tissues analyzed but TACC1-D and TACC1-F showed a restricted expression pattern. TACC1-F, a transcript representing the SEREX-identified cDNA clone, was predominantly expressed in brain and gastric tumors to a similar level. TACC1-D was only weakly detectable in kidney and colon but not in other normal tissues, while a relatively strong expression was observed in 50% of gastric cancer tissue samples analyzed. These transcript variants are generated possibly as a result of alterations in efficiency and pattern of alternative splicing; these isoforms may represent genetic markers, for example TACC1-D for gastric cancer. We also propose that inappropriate expression of the isoforms in gastric cancer cells might result in dysfunction of TACC1 thus contributing to the genetic instability.
authors.affiliation: Biomedical Research and Study Center, University of Latvia, Riga, Latvia. aija@biomed.lu.lv
authors.forename: Aija
authors.initials: A
authors.lastname: Line
authors.forename: Zane
authors.initials: Z
authors.lastname: Slucka
authors.forename: Aivars
authors.initials: A
authors.lastname: Stengrevics
authors.forename: Geng
authors.initials: G
authors.lastname: Li
authors.forename: Robert C
authors.initials: RC
authors.lastname: Rees
mesh_terms: D017398:Alternative Splicing / Q000235:genetics*; D001483:Base Sequence; D017931:DNA Primers; D005326:Fetal Proteins / Q000235:genetics*; D014644:Genetic Variation; D006801:Humans; D008869:Microtubule-Associated Proteins / Q000235:genetics*; D009687:Nuclear Proteins / Q000235:genetics*; D016133:Polymerase Chain Reaction; D012333:RNA, Messenger / Q000235:genetics*; D013274:Stomach Neoplasms / Q000235:genetics*; D014158:Transcription, Genetic
chemical_list: D017931:DNA Primers; D005326:Fetal Proteins; D008869:Microtubule-Associated Proteins; D009687:Nuclear Proteins; D012333:RNA, Messenger; C120584:TACC1 protein, human