Molecular-level thermodynamic switch controls chemical equilibrium in sequence-specific hydrophobic interaction of 35 dipeptide pairs.
Applying the Planck-Benzinger methodology, the sequence-specific hydrophobic interactions of 35 dipeptide pairs were examined over a temperature range of 273-333 K, based on data reported by Nemethy and Scheraga in 1962. The hydrophobic interaction in these sequence-specific dipeptide pairs is highly similar in its thermodynamic behavior to that of other biological systems. The results imply that the negative Gibbs free energy change minimum at a well-defined stable temperature, <T(s)>, where the bound unavailable energy, TdeltaS(o) = 0, has its origin in the sequence-specific hydrophobic interactions, are highly dependent on details of molecular structure. Each case confirms the existence of a thermodynamic molecular switch wherein a change of sign in deltaCp(o)(T)(reaction) (change in specific heat capacity of reaction at constant pressure) leads to true negative minimum in the Gibbs free energy change of reaction, deltaG(o)(T)(reaction), and hence a maximum in the related equilibrium constant, K(eq). Indeed, all interacting biological systems examined to date by Chun using the Planck-Benzinger methodology have shown such a thermodynamic switch at the molecular level, suggesting its existence may be universal.
Chun
Paul W
PW
Department of Biochemistry and Molecular Biology, University of Florida, Gainesville, Florida 32610-0245, USA. pwchun@biochem.med.ufl.edu
D000595:Amino Acid Sequence; D000596:Amino Acids / Q000737:chemistry; D004735:Energy Transfer; D057927:Hydrophobic and Hydrophilic Interactions; D007700:Kinetics; D046911:Macromolecular Substances; D008956:Models, Chemical; D008958:Models, Molecular; D008969:Molecular Sequence Data; D010455:Peptides / Q000737:chemistry*; D011489:Protein Denaturation; D012996:Solutions / Q000737:chemistry*; D013329:Structure-Activity Relationship; D013696:Temperature; D013816:Thermodynamics
D000596:Amino Acids; D046911:Macromolecular Substances; D010455:Peptides; D012996:Solutions