title: Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE gene.
abstract: So far, the extremely halophilic archaeon Haloferax volcanii has the best genetic tools among the archaea. However, the lack of an efficient gene knockout system for this organism has hampered further genetic studies. In this paper we describe the development of pyrE-based positive selection and counterselection systems to generate an efficient gene knockout system. The H. volacanii pyrE1 and pyrE2 genes were isolated, and the pyrE2 gene was shown to code for the physiological enzyme orotate phosphoribosyl transferase. A DeltapyrE2 strain was constructed and used to isolate deletion mutants by the following two steps: (i) integration of a nonreplicative plasmid carrying both the pyrE2 wild-type gene, as a selectable marker, and a cloned chromosomal DNA fragment containing a deletion in the desired gene; and (ii) excision of the integrated plasmid after selection with 5-fluoroorotic acid. Application of this gene knockout system is described.
authors.affiliation: Department of Molecular Microbiology and Biotechnology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel.
authors.forename: Gili
authors.initials: G
authors.lastname: Bitan-Banin
authors.forename: Ron
authors.initials: R
authors.lastname: Ortenberg
authors.forename: Moshe
authors.initials: M
authors.lastname: Mevarech
mesh_terms: D000595:Amino Acid Sequence; D003001:Cloning, Molecular; D017353:Gene Deletion; D005798:Genes, Bacterial / Q000235:genetics*; D005819:Genetic Markers; D019622:Haloferax volcanii / Q000235:genetics*; D008969:Molecular Sequence Data; D009962:Orotate Phosphoribosyltransferase / Q000737:chemistry / Q000235:genetics*; D010641:Phenotype; D010957:Plasmids
chemical_list: D005819:Genetic Markers; D009962:Orotate Phosphoribosyltransferase