SEGID: identifying interesting segments in (multiple) sequence alignments.
CONCLUSIONS
SEGID is a tool for finding conserved regions (regions of high scores) for a given (multiple) sequence alignment. It takes a (multiple) sequence alignment as its input and converts the alignment into a sequence of numbers, where each number is the alignment score of a column. Three algorithms are used to identify regions of high scores. A graphical interface is provided to present those identified regions.


BACKGROUND
Free from http://www.cs.cityu.edu.hk/~lwang/segid/subject to copyright restrictions.
Wang
Lusheng
L
Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong. cswangl@cityu.edu.hk
Xu
Ying
Y
D000465:Algorithms; D017124:Conserved Sequence; D019146:Hypermedia; D016415:Sequence Alignment / Q000379:methods*; D017421:Sequence Analysis / Q000379:methods*; D012984:Software