title: Detection of single unit activity from the rat vagus using cluster analysis of principal components.
abstract: In vivo recordings from subdiaphragmatic vagal afferent nerves generally lack the resolution to distinguish single unit activity. Several methods for data acquisition and analysis were combined to produce a high degree of reliability in recording electrophysiological signals from gastrointestinal and hepatic afferent fibers in the rat. Recordings with low noise were achieved by paralysis of the respiratory muscles and by pinning the nerve to a recording platform. Single unit activity was isolated using principal component (PC) analysis and cluster cutting of data in multi-dimensional space (1-3 PCs). Cluster assignments were determined by a semi-automated approach using the k-means algorithm. The accuracy of single unit classification was assessed by checking inter-spike intervals (ISIs) to determine the length of the refractory period, and by cross-correlation analysis to assess whether single units were mistakenly split into more than one cluster. These analyses produced up to four isolated single units from each nerve filament (a bundle of nerve fibers), and typically it was possible to further increase yield by recording from several nerve filaments simultaneously using an array of electrodes.
authors.affiliation: The Monell Chemical Senses Center, 3500 Market Street, Philadelphia, PA 19104, USA. horn@monell.org
authors.forename: Charles C
authors.initials: CC
authors.lastname: Horn
authors.forename: Mark I
authors.initials: MI
authors.lastname: Friedman
mesh_terms: D000200:Action Potentials / Q000502:physiology*; D000818:Animals; D016000:Cluster Analysis; D003964:Diaphragm / Q000294:innervation / Q000502:physiology; D004594:Electrophysiology / Q000379:methods*; D008297:Male; D009412:Nerve Fibers / Q000145:classification* / Q000502:physiology*; D009475:Neurons, Afferent / Q000145:classification / Q000502:physiology; D025341:Principal Component Analysis; D051381:Rats; D011916:Rats, Inbred F344; D012815:Signal Processing, Computer-Assisted; D013223:Statistics as Topic; D014630:Vagus Nerve / Q000502:physiology*