title: Development of strain-specific PCR reactions for the detection of the probiotic Escherichia coli strain Nissle 1917 in fecal samples.
abstract: PCR was used to establish a specific detection system for the non-pathogenic Escherichia coli strain Nissle 1917 (DSM6601), which is used as a probiotic drug against intestinal disorders and diseases. Five PCR assays have been developed which are based on the chromosomally encoded major fimbrial subunit genes fimA (type 1 fimbriae) and focA (F1C fimbriae), and the two small cryptic plasmids pMUT1 and pMUT2. The assays were validated by testing a collection of 354 different pathogenic and non-pathogenic E. coli strains from various origins, including E. coli K-12, fecal and environmental as well as pathogenic extraintestinal and intestinal E. coli strains. The most specific results were obtained with primers based on DNA sequences from plasmid pMUT2. The plasmid-based PCR assays described can be used to detect E. coli strain Nissle 1917 in feces from patients without prior cultivation.
authors.affiliation: Institut für Molekulare Infektionsbiologie, Röntgenring 11, D-97070, Würzburg, Germany
authors.forename: Gabriele
authors.initials: G
authors.lastname: Blum-Oehler
authors.forename: Sibylle
authors.initials: S
authors.lastname: Oswald
authors.forename: Karin
authors.initials: K
authors.lastname: Eiteljörge
authors.forename: Ulrich
authors.initials: U
authors.lastname: Sonnenborn
authors.forename: Jürgen
authors.initials: J
authors.lastname: Schulze
authors.forename: Wolfgang
authors.initials: W
authors.lastname: Kruis
authors.forename: Jörg
authors.initials: J
authors.lastname: Hacker
mesh_terms: D017931:DNA Primers; D004269:DNA, Bacterial / Q000737:chemistry; D004926:Escherichia coli / Q000235:genetics / Q000302:isolation & purification*; D005243:Feces / Q000382:microbiology*; D006801:Humans; D016133:Polymerase Chain Reaction / Q000379:methods*; D012680:Sensitivity and Specificity
chemical_list: D017931:DNA Primers; D004269:DNA, Bacterial