KnowledgeEditor: a new tool for interactive modeling and analyzing biological pathways based on microarray data.
KnowledgeEditor is a graphical workbench for biological experts to model biomolecular network graphs. The modeled network data are represented by SRML, and can be published via the internet with the help of plug-in module 'GSCope'. KnowledgeEditor helps us to model and analyze biological pathways based on microarray data. It is possible to analyze the drawn networks by simulating up-down regulatory cascade in molecular interactions.


BACKGROUND
KnowledgeEditor is available at http://gscope.gsc.riken.go.jp/.
Toyoda
Tetsuro
T
Bioinformatics Group, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa, 230-0045, Japan. bioinfo@gsc.riken.go.jp
Konagaya
Akihiko
A
D016000:Cluster Analysis; D003628:Database Management Systems; D004282:Documentation / Q000379:methods; D005786:Gene Expression Regulation; D016247:Information Storage and Retrieval / Q000379:methods; D008954:Models, Biological; D008956:Models, Chemical; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D014584:User-Computer Interface