3MOTIF: visualizing conserved protein sequence motifs in the protein structure database.
CONCLUSIONS
3MOTIF is a web application that visually maps conserved sequence motifs onto three-dimensional protein structures in the Protein Data Bank (PDB; Berman et al., Nucleic Acids Res., 28, 235-242, 2000). Important properties of motifs such as conservation strength and solvent accessible surface area at each position are visually represented on the structure using a variety of color shading schemes. Users can manipulate the displayed motifs using the freely available Chime plugin.


BACKGROUND
http://motif.stanford.edu/3motif/
Bennett
Steven P
SP
Department of Biochemistry, B400 Beckman Center, Stanford University, CA 94305-5307, USA.
Nevill-Manning
Craig G
CG
Brutlag
Douglas L
DL
D020816:Amino Acid Motifs; D000595:Amino Acid Sequence; D017124:Conserved Sequence; D003628:Database Management Systems; D030562:Databases, Protein; D021621:Imaging, Three-Dimensional / Q000379:methods*; D020407:Internet; D008958:Models, Molecular; D008969:Molecular Sequence Data; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry*; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods; D012984:Software; D014584:User-Computer Interface
D011506:Proteins