title: Molecular diversity in the bacterial community and the fluorescent pseudomonads group in natural and chlorobenzoate-stressed peat-forest soil.
abstract: Bacterial community shifts in a soil microcosm spiked with 3-chlorobenzoate or 2,5-dichlorobenzoate were monitored. The V6-V8 variable regions of soil bacterial 16S rRNA and rDNA were amplified and separated by temperature gradient gel electrophoresis (TGGE) profiling. Culturing in the presence of 2.5 mM chlorinated benzoates suppressed 10 to 100 fold the total aerobic bacterial community but had no effect on the diversity within the group of fluorescent pseudomonads. In contrast, the uncultured bacterial community showed a decrease in the number of bands in the TGGE profiles of the chlorobenzoate-spiked treatments. Accordingly, the Shannon's diversity and equitability indices of these treatments reflected a decreasing trend in time. The approach allowed a direct assessment of community shifts upon contamination of soil.
authors.affiliation: Laboratory of Microbiology, Wageningen University, Hesselink van Suchtelenweg 4, 6703 CT Wageningen, The Netherlands.
authors.forename: Hugo C
authors.initials: HC
authors.lastname: Ramírez-Saad
authors.forename: Angela
authors.initials: A
authors.lastname: Sessitsch
authors.forename: Antoon D L
authors.initials: AD
authors.lastname: Akkermans
mesh_terms: D001419:Bacteria / Q000145:classification / Q000187:drug effects / Q000235:genetics*; D002723:Chlorobenzoates / Q000494:pharmacology*; D004269:DNA, Bacterial / Q000737:chemistry / Q000235:genetics; D017753:Ecosystem; D005453:Fluorescence; D011548:Pseudomonadaceae / Q000187:drug effects / Q000235:genetics / Q000302:isolation & purification*; D011551:Pseudomonas fluorescens / Q000187:drug effects / Q000235:genetics / Q000302:isolation & purification; D012329:RNA, Bacterial / Q000235:genetics / Q000378:metabolism; D021521:Ribotyping / Q000379:methods; D012988:Soil Microbiology; D014197:Trees / Q000382:microbiology*
chemical_list: D002723:Chlorobenzoates; D004269:DNA, Bacterial; D012329:RNA, Bacterial; C036427:3-chlorobenzoic acid; C073069:2,5-dichlorobenzoic acid