STRP screening sets for the human genome at 5 cM density.
BACKGROUND
Short tandem repeat polymorphisms (STRPs) are powerful tools for gene mapping and other applications. A STRP genome scan of 10 cM is usually adequate for mapping single gene disorders. However mapping studies involving genetically complex disorders and especially association (linkage disequilibrium) often require higher STRP density.


RESULTS
We report the development of two separate 10 cM human STRP Screening Sets (Sets 12 and 52) which span all chromosomes. When combined, the two Sets contain a total of 782 STRPs, with average STRP spacing of 4.8 cM, average heterozygosity of 0.72, and total sex-average coverage of 3535 cM. The current Sets are comprised almost entirely of STRPs based on tri- and tetranucleotide repeats. We also report correction of primer sequences for many STRPs used in previous Screening Sets. Detailed information for the new Screening Sets is available from our web site: http://research.marshfieldclinic.org/genetics.


CONCLUSIONS
Our new human STRP Screening Sets will improve the quality and cost effectiveness of genotyping for gene mapping and other applications.
Ghebranious
Nader
N
Molecular Diagnostic Genotyping Laboratory, Marshfield Clinic Research Foundation, Marshfield, WI 54449, USA. ghebranious.nader@marshfieldclinic.org
Vaske
David
D
Yu
Adong
A
Zhao
Chengfeng
C
Marth
Gabor
G
Weber
James L
JL
D001483:Base Sequence; D002874:Chromosome Mapping / Q000379:methods*; D005820:Genetic Testing / Q000379:methods / Q000592:standards; D015894:Genome, Human; D006801:Humans; D018895:Microsatellite Repeats / Q000235:genetics; D008969:Molecular Sequence Data; D011110:Polymorphism, Genetic / Q000235:genetics