title: Stochastic gene expression as a many-body problem.
abstract: Gene expression has a stochastic component because of the single-molecule nature of the gene and the small number of copies of individual DNA-binding proteins in the cell. We show how the statistics of such systems can be mapped onto quantum many-body problems. The dynamics of a single gene switch resembles the spin-boson model of a two-site polaron or an electron transfer reaction. Networks of switches can be approximately described as quantum spin systems by using an appropriate variational principle. In this way, the concept of frustration for magnetic systems can be taken over into gene networks. The landscape of stable attractors depends on the degree and style of frustration, much as for neural networks. We show the number of attractors, which may represent cell types, is much smaller for appropriately designed weakly frustrated stochastic networks than for randomly connected networks.
authors.affiliation: Graduate School of Human Informatics, Nagoya University, Nagoya 464-8601, Japan.
authors.forename: Masaki
authors.initials: M
authors.lastname: Sasai
authors.forename: Peter G
authors.initials: PG
authors.lastname: Wolynes
mesh_terms: D000465:Algorithms; D000818:Animals; D055592:Biophysical Phenomena; D001703:Biophysics; D015870:Gene Expression; D008958:Models, Molecular; D008962:Models, Theoretical; D008967:Molecular Biology / Q000379:methods; D013269:Stochastic Processes