title: Protein family annotation in a multiple alignment viewer.
abstract: CONCLUSIONS
  The Pfaat protein family alignment annotation tool is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. The application merges display features such as dendrograms, secondary and tertiary protein structure with SRS retrieval, subgroup comparison, and extensive user-annotation capabilities.
  
  
  BACKGROUND
  The program and source code are freely available from the authors under the GNU General Public License at http://www.pfizerdtc.com
authors.affiliation: Pfizer Discovery Technology Center, 620 Memorial Drive, Cambridge, MA 02139, USA. jason_johnson@merck.com
authors.forename: Jason M
authors.initials: JM
authors.lastname: Johnson
authors.forename: Keith
authors.initials: K
authors.lastname: Mason
authors.forename: Ciamac
authors.initials: C
authors.lastname: Moallemi
authors.forename: Hualin
authors.initials: H
authors.lastname: Xi
authors.forename: Shyamal
authors.initials: S
authors.lastname: Somaroo
authors.forename: Enoch S
authors.initials: ES
authors.lastname: Huang
mesh_terms: D000595:Amino Acid Sequence; D004282:Documentation; D016247:Information Storage and Retrieval / Q000379:methods*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry* / Q000145:classification; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods; D012984:Software; D014584:User-Computer Interface
chemical_list: D011506:Proteins