Molecular basis for microbial adhesion to geochemical surfaces: computer simulation of Pseudomonas aeruginosa adhesion to goethite.
The adhesion of Pseudomonas aeruginosa to the goethite mineral is investigated using classical molecular simulation. A fragment model for goethite has been integrated into a fully atomistic membrane model. Properties for the resulting system are evaluated for a 1.5-ns simulation in the isothermal-isobaric ensemble. The response of the membrane to the presence of the mineral is investigated. Radial distribution functions are used to present an average picture of the hydrogen bonding. Orientational vectors, assigned to the saccharide groups, reveal the extent of the mineral's perturbations on the membrane. Significant structural changes were observed for the outermost saccharide groups, several of which rotate to form hydrogen bonds with the mineral surface. The structure of the inner core, and the corresponding integrity of the membrane, is maintained. The mineral surface dehydrates slightly in the presence of the membrane as saccharide hydroxyl groups compete with water molecules for hydrogen-bonding sites on its surface.
Shroll
Robert M
RM
Computational Biosciences, Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.
Straatsma
T P
TP
D001422:Bacterial Adhesion; D001665:Binding Sites; D002462:Cell Membrane / Q000737:chemistry* / Q000502:physiology; D003198:Computer Simulation; D006860:Hydrogen Bonding; D058085:Iron Compounds / Q000737:chemistry*; D008070:Lipopolysaccharides / Q000737:chemistry*; D046911:Macromolecular Substances; D008903:Minerals; D008954:Models, Biological; D008956:Models, Chemical; D008958:Models, Molecular; D008968:Molecular Conformation; D011550:Pseudomonas aeruginosa / Q000737:chemistry* / Q000502:physiology
D058085:Iron Compounds; D008070:Lipopolysaccharides; D046911:Macromolecular Substances; D008903:Minerals; C094886:goethite