title: Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA.
abstract: PrfA is the major regulator of Listeria virulence gene expression. This protein is a member of the Crp/Fnr family of transcription regulators. To gain a deeper understanding of the PrfA regulon, we constructed a whole-genome array based on the complete genome sequence of Listeria monocytogenes strain EGDe and evaluated the expression profiles of the wild-type EGDe and a prfA-deleted mutant (EGDe Delta prfA). Both strains were grown at 37 degrees C in brain-heart infusion broth (BHI) and BHI supplemented with either activated charcoal, a compound known to enhance virulence gene expression, or cellobiose, a sugar reported to downregulate virulence gene expression in spite of full expression of PrfA. We identified three groups of genes that are regulated differently. Group I comprises, in addition to the 10 already known genes, two new genes, lmo2219 and lmo0788, both positively regulated and preceded by a putative PrfA box. Group II comprises eight negatively regulated genes: lmo0278 is preceded by a putative PrfA box, and the remaining seven genes (lmo0178-lmo0184) are organized in an operon. Group III comprises 53 genes, of which only two (lmo0596 and lmo2067) are preceded by a putative PrfA box. Charcoal addition induced upregulation of group I genes but abolished regulation by PrfA of most group III genes. In the presence of cellobiose, all the group I genes were downregulated, whereas group III genes remained fully activated. Group II genes were repressed in all conditions tested. A comparison of the expression profiles between a second L. monocytogenes strain (P14), its spontaneous mutant expressing a constitutively active PrfA variant (P14prfA*) and its corresponding prfA-deleted mutant (P14 Delta prfA) and the EGDe strain revealed interesting strain-specific differences. Sequences strongly similar to a sigma B-dependent promoter were identified upstream of 22 group III genes. These results suggest that PrfA positively regulates a core set of 12 genes preceded by a PrfA box and probably expressed from a sigma A-dependent promoter. In contrast, a second set of PrfA-regulated genes lack a PrfA box and are expressed from a sigma B-dependent promoter. This study reveals that PrfA can act as an activator or a repressor and suggests that PrfA may directly or indirectly activate different sets of genes in association with different sigma factors.
authors.affiliation: Unité des Interactions Bactéries-Cellules and Laboratoire de Génomique des Microorganismes Pathogènes, Institut Pasteur, 28, Rue du Docteur Roux, 75724 Paris Cedex 15, France.
authors.forename: Eliane
authors.initials: E
authors.lastname: Milohanic
authors.forename: Philippe
authors.initials: P
authors.lastname: Glaser
authors.forename: Jean-Yves
authors.initials: JY
authors.lastname: Coppée
authors.forename: Lionel
authors.initials: L
authors.lastname: Frangeul
authors.forename: Yolanda
authors.initials: Y
authors.lastname: Vega
authors.forename: José A
authors.initials: JA
authors.lastname: Vázquez-Boland
authors.forename: Frank
authors.initials: F
authors.lastname: Kunst
authors.forename: Pascale
authors.initials: P
authors.lastname: Cossart
authors.forename: Carmen
authors.initials: C
authors.lastname: Buchrieser
mesh_terms: D001426:Bacterial Proteins / Q000235:genetics* / Q000378:metabolism; D002455:Cell Division / Q000235:genetics; D002475:Cellobiose / Q000378:metabolism; D002606:Charcoal; D003470:Culture Media / Q000737:chemistry; D020869:Gene Expression Profiling; D015964:Gene Expression Regulation, Bacterial; D005798:Genes, Bacterial; D008089:Listeria monocytogenes / Q000235:genetics* / Q000378:metabolism; D009154:Mutation; D020411:Oligonucleotide Array Sequence Analysis; D010454:Peptide Termination Factors; D016133:Polymerase Chain Reaction / Q000379:methods; D015534:Trans-Activators / Q000235:genetics* / Q000378:metabolism; D014158:Transcription, Genetic
chemical_list: D001426:Bacterial Proteins; D003470:Culture Media; D010454:Peptide Termination Factors; D015534:Trans-Activators; D002606:Charcoal; D002475:Cellobiose