Protein family annotation in a multiple alignment viewer.
CONCLUSIONS
The Pfaat protein family alignment annotation tool is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. The application merges display features such as dendrograms, secondary and tertiary protein structure with SRS retrieval, subgroup comparison, and extensive user-annotation capabilities.


BACKGROUND
The program and source code are freely available from the authors under the GNU General Public License at http://www.pfizerdtc.com
Johnson
Jason M
JM
Pfizer Discovery Technology Center, 620 Memorial Drive, Cambridge, MA 02139, USA. jason_johnson@merck.com
Mason
Keith
K
Moallemi
Ciamac
C
Xi
Hualin
H
Somaroo
Shyamal
S
Huang
Enoch S
ES
D000595:Amino Acid Sequence; D004282:Documentation; D016247:Information Storage and Retrieval / Q000379:methods*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry* / Q000145:classification; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods; D012984:Software; D014584:User-Computer Interface
D011506:Proteins