title: The T cell receptor beta locus of the channel catfish, Ictalurus punctatus, reveals unique features.
abstract: Previously, a series of clonal alloantigen-dependent T cell lines established from the channel catfish revealed distinctly different TCR beta rearrangements. Here, a follow-up study of the junctional diversity of these TCR gene rearrangements focuses on characterization of the genomic organization of the TCRB locus. Surprisingly, a total of 29 JB genes and two substantially different CB genes were identified downstream of a single DB gene. This is in contrast to the situation in mammals, where two clusters of a DB gene, six or seven JB genes, and a CB gene are found in tandem. The catfish CB genes are approximately 36% identical at the amino acid level. All 29 catfish JB gene segments appear functional. Thirteen were used in the 19 cDNAs analyzed, of these eight were used by the 11 catfish clonal alloantigen-dependent T cell lines. As might be expected, CDR3 diversity is enhanced by N-nucleotide additions as well as nucleotide deletions at the V-D and D-J junctions. Taken together, compared with that in mammals, genomic sequencing of the catfish TCR DB-JB-CB region reveals a unique locus containing a greater number of JB genes and two distinct CB genes.
authors.affiliation: Department of Microbiology, University of Mississippi Medical Center, Jackson, MS 39216 USA.
authors.forename: He
authors.initials: H
authors.lastname: Zhou
authors.forename: Eva
authors.initials: E
authors.lastname: Bengtén
authors.forename: Norman W
authors.initials: NW
authors.lastname: Miller
authors.forename: L William
authors.initials: LW
authors.lastname: Clem
authors.forename: Melanie
authors.initials: M
authors.lastname: Wilson
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D002460:Cell Line; D002999:Clone Cells; D003001:Cloning, Molecular; D022801:Complementarity Determining Regions / Q000737:chemistry / Q000235:genetics / Q000302:isolation & purification; D015723:Gene Library; D015333:Gene Rearrangement, beta-Chain T-Cell Antigen Receptor; D019674:Genes, T-Cell Receptor beta; D005819:Genetic Markers / Q000276:immunology; D007059:Ictaluridae / Q000235:genetics* / Q000276:immunology*; D008969:Molecular Sequence Data; D016693:Receptors, Antigen, T-Cell, alpha-beta / Q000737:chemistry / Q000235:genetics* / Q000302:isolation & purification; D013602:T-Lymphocytes, Cytotoxic / Q000276:immunology / Q000378:metabolism
chemical_list: D022801:Complementarity Determining Regions; D005819:Genetic Markers; D016693:Receptors, Antigen, T-Cell, alpha-beta