TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
TGICL is a pipeline for analysis of large Expressed Sequence Tags (EST) and mRNA databases in which the sequences are first clustered based on pairwise sequence similarity, and then assembled by individual clusters (optionally with quality values) to produce longer, more complete consensus sequences. The system can run on multi-CPU architectures including SMP and PVM.
Pertea
Geo
G
The Institute for Genomic Research, Rockville, MD 20850, USA.
Huang
Xiaoqiu
X
Liang
Feng
F
Antonescu
Valentin
V
Sultana
Razvan
R
Karamycheva
Svetlana
S
Lee
Yuandan
Y
White
Joseph
J
Cheung
Foo
F
Parvizi
Babak
B
Tsai
Jennifer
J
Quackenbush
John
J
D016000:Cluster Analysis; D003628:Database Management Systems; D030561:Databases, Nucleic Acid; D020224:Expressed Sequence Tags; D020869:Gene Expression Profiling / Q000379:methods*; D005786:Gene Expression Regulation / Q000235:genetics; D016247:Information Storage and Retrieval / Q000379:methods*; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D017385:Sequence Homology; D012984:Software