title: A consolidated linkage map for rainbow trout (Oncorhynchus mykiss).
abstract: Androgenetic doubled haploid progeny produced from a cross between the Oregon State University and Arlee clonal rainbow trout (Oncorhynchus mykiss) lines, used for a previous published rainbow trout map, were used to update the map with the addition of more amplified fragment length polymorphic (AFLP) markers, microsatellites, type I and allozyme markers. We have added more than 900 markers, bringing the total number to 1359 genetic markers and the sex phenotype including 799 EcoRI AFLPs, 174 PstI AFLPs, 226 microsatellites, 72 VNTR, 38 SINE markers, 29 known genes, 12 minisatellites, five RAPDs, and four allozymes. Thirty major linkage groups were identified. Synteny of linkage groups in our map with the outcrossed microsatellite map has been established for all except one linkage group in this doubled haploid cross. Putative homeologous relationships among linkage groups, resulting from the autotetraploid nature of the salmonid genome, have been revealed based on the placement of duplicated microsatellites and type I loci.
authors.affiliation: School of Biological Sciences, Washington State University, Pullman, WA, USA.
authors.forename: K M
authors.initials: KM
authors.lastname: Nichols
authors.forename: W P
authors.initials: WP
authors.lastname: Young
authors.forename: R G
authors.initials: RG
authors.lastname: Danzmann
authors.forename: B D
authors.initials: BD
authors.lastname: Robison
authors.forename: C
authors.initials: C
authors.lastname: Rexroad
authors.forename: M
authors.initials: M
authors.lastname: Noakes
authors.forename: R B
authors.initials: RB
authors.lastname: Phillips
authors.forename: P
authors.initials: P
authors.lastname: Bentzen
authors.forename: I
authors.initials: I
authors.lastname: Spies
authors.forename: K
authors.initials: K
authors.lastname: Knudsen
authors.forename: F W
authors.initials: FW
authors.lastname: Allendorf
authors.forename: B M
authors.initials: BM
authors.lastname: Cunningham
authors.forename: J
authors.initials: J
authors.lastname: Brunelli
authors.forename: H
authors.initials: H
authors.lastname: Zhang
authors.forename: S
authors.initials: S
authors.lastname: Ristow
authors.forename: R
authors.initials: R
authors.lastname: Drew
authors.forename: K H
authors.initials: KH
authors.lastname: Brown
authors.forename: P A
authors.initials: PA
authors.lastname: Wheeler
authors.forename: G H
authors.initials: GH
authors.lastname: Thorgaard
mesh_terms: D000818:Animals; D020869:Gene Expression Profiling; D008040:Genetic Linkage; D005819:Genetic Markers; D017686:Oncorhynchus mykiss / Q000235:genetics*
chemical_list: D005819:Genetic Markers