Glass transition in an off-lattice protein model studied by molecular dynamics simulations.
In this paper we report the results of a numerical investigation of the glass transition phenomenon in a minimalist protein model. The inherent structure theory of Stillinger and Weber was applied to an off-lattice protein model with a native state beta-sheet motif. By using molecular dynamics simulations and the steepest descent method, sets of local potential energy minima were generated for the model over a range of temperatures. The mean potential energy of the inherent structures allowed to make rough estimates of the glass-transition temperature T(K). More accurately T(K) was computed by direct evaluations of the total and vibrational entropies. It is found that for the present model the thermodynamic ratio of the folding and glass-transition temperatures is 1.7 which is in good agreement with experimental observations.
Baumketner
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A
Department of Chemistry and Biochemistry, University of California at Santa Barbara, Santa Barbara, California 93106, USA. andrij@icmp.lviv.ua
Shea
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JE
Hiwatari
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Y