title: A novel coronavirus associated with severe acute respiratory syndrome.
abstract: BACKGROUND
  A worldwide outbreak of severe acute respiratory syndrome (SARS) has been associated with exposures originating from a single ill health care worker from Guangdong Province, China. We conducted studies to identify the etiologic agent of this outbreak.
  
  
  METHODS
  We received clinical specimens from patients in seven countries and tested them, using virus-isolation techniques, electron-microscopical and histologic studies, and molecular and serologic assays, in an attempt to identify a wide range of potential pathogens.
  
  
  RESULTS
  None of the previously described respiratory pathogens were consistently identified. However, a novel coronavirus was isolated from patients who met the case definition of SARS. Cytopathological features were noted in Vero E6 cells inoculated with a throat-swab specimen. Electron-microscopical examination revealed ultrastructural features characteristic of coronaviruses. Immunohistochemical and immunofluorescence staining revealed reactivity with group I coronavirus polyclonal antibodies. Consensus coronavirus primers designed to amplify a fragment of the polymerase gene by reverse transcription-polymerase chain reaction (RT-PCR) were used to obtain a sequence that clearly identified the isolate as a unique coronavirus only distantly related to previously sequenced coronaviruses. With specific diagnostic RT-PCR primers we identified several identical nucleotide sequences in 12 patients from several locations, a finding consistent with a point-source outbreak. Indirect fluorescence antibody tests and enzyme-linked immunosorbent assays made with the new isolate have been used to demonstrate a virus-specific serologic response. This virus may never before have circulated in the U.S. population.
  
  
  CONCLUSIONS
  A novel coronavirus is associated with this outbreak, and the evidence indicates that this virus has an etiologic role in SARS. Because of the death of Dr. Carlo Urbani, we propose that our first isolate be named the Urbani strain of SARS-associated coronavirus.
authors.affiliation: Special Pathogens Branch, National Center for Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, USA.
authors.forename: Thomas G
authors.initials: TG
authors.lastname: Ksiazek
authors.forename: Dean
authors.initials: D
authors.lastname: Erdman
authors.forename: Cynthia S
authors.initials: CS
authors.lastname: Goldsmith
authors.forename: Sherif R
authors.initials: SR
authors.lastname: Zaki
authors.forename: Teresa
authors.initials: T
authors.lastname: Peret
authors.forename: Shannon
authors.initials: S
authors.lastname: Emery
authors.forename: Suxiang
authors.initials: S
authors.lastname: Tong
authors.forename: Carlo
authors.initials: C
authors.lastname: Urbani
authors.forename: James A
authors.initials: JA
authors.lastname: Comer
authors.forename: Wilina
authors.initials: W
authors.lastname: Lim
authors.forename: Pierre E
authors.initials: PE
authors.lastname: Rollin
authors.forename: Scott F
authors.initials: SF
authors.lastname: Dowell
authors.forename: Ai-Ee
authors.initials: AE
authors.lastname: Ling
authors.forename: Charles D
authors.initials: CD
authors.lastname: Humphrey
authors.forename: Wun-Ju
authors.initials: WJ
authors.lastname: Shieh
authors.forename: Jeannette
authors.initials: J
authors.lastname: Guarner
authors.forename: Christopher D
authors.initials: CD
authors.lastname: Paddock
authors.forename: Paul
authors.initials: P
authors.lastname: Rota
authors.forename: Barry
authors.initials: B
authors.lastname: Fields
authors.forename: Joseph
authors.initials: J
authors.lastname: DeRisi
authors.forename: Jyh-Yuan
authors.initials: JY
authors.lastname: Yang
authors.forename: Nancy
authors.initials: N
authors.lastname: Cox
authors.forename: James M
authors.initials: JM
authors.lastname: Hughes
authors.forename: James W
authors.initials: JW
authors.lastname: LeDuc
authors.forename: William J
authors.initials: WJ
authors.lastname: Bellini
authors.forename: Larry J
authors.initials: LJ
authors.lastname: Anderson
mesh_terms: D000328:Adult; D000818:Animals; D001992:Bronchoalveolar Lavage Fluid / Q000821:virology; D002460:Cell Line; D004196:Disease Outbreaks; D005260:Female; D006801:Humans; D008168:Lung / Q000473:pathology / Q000821:virology; D008297:Male; D008854:Microscopy, Electron; D008875:Middle Aged; D009960:Oropharynx / Q000821:virology; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D012367:RNA, Viral / Q000032:analysis; D045473:Severe acute respiratory syndrome-related coronavirus / Q000145:classification / Q000235:genetics / Q000302:isolation & purification* / Q000648:ultrastructure; D045169:Severe Acute Respiratory Syndrome / Q000453:epidemiology / Q000473:pathology / Q000821:virology*
chemical_list: D012367:RNA, Viral