title: GoMiner: a resource for biological interpretation of genomic and proteomic data.
abstract: We have developed GoMiner, a program package that organizes lists of 'interesting' genes (for example, under- and overexpressed genes from a microarray experiment) for biological interpretation in the context of the Gene Ontology. GoMiner provides quantitative and statistical output files and two useful visualizations. The first is a tree-like structure analogous to that in the AmiGO browser and the second is a compact, dynamically interactive 'directed acyclic graph'. Genes displayed in GoMiner are linked to major public bioinformatics resources.
authors.affiliation: Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
authors.forename: Barry R
authors.initials: BR
authors.lastname: Zeeberg
authors.forename: Weimin
authors.initials: W
authors.lastname: Feng
authors.forename: Geoffrey
authors.initials: G
authors.lastname: Wang
authors.forename: May D
authors.initials: MD
authors.lastname: Wang
authors.forename: Anthony T
authors.initials: AT
authors.lastname: Fojo
authors.forename: Margot
authors.initials: M
authors.lastname: Sunshine
authors.forename: Sudarshan
authors.initials: S
authors.lastname: Narasimhan
authors.forename: David W
authors.initials: DW
authors.lastname: Kane
authors.forename: William C
authors.initials: WC
authors.lastname: Reinhold
authors.forename: Samir
authors.initials: S
authors.lastname: Lababidi
authors.forename: Kimberly J
authors.initials: KJ
authors.lastname: Bussey
authors.forename: Joseph
authors.initials: J
authors.lastname: Riss
authors.forename: J Carl
authors.initials: JC
authors.lastname: Barrett
authors.forename: John N
authors.initials: JN
authors.lastname: Weinstein
mesh_terms: D003196:Computer Graphics; D003627:Data Interpretation, Statistical; D030541:Databases, Genetic; D020869:Gene Expression Profiling; D023281:Genomics; D006801:Humans; D020411:Oligonucleotide Array Sequence Analysis; D040901:Proteomics; D012984:Software; D012985:Software Design