title: Maintenance of the correct open reading frame by the ribosome.
abstract: During translation, a string of non-overlapping triplet codons in messenger RNA is decoded into protein. The ability of a ribosome to decode mRNA without shifting between reading frames is a strict requirement for accurate protein biosynthesis. Despite enormous progress in understanding the mechanism of transfer RNA selection, the mechanism by which the correct reading frame is maintained remains unclear. In this report, evidence is presented that supports the idea that the translational frame is controlled mainly by the stability of codon-anticodon interactions at the P site. The relative instability of such interactions may lead to dissociation of the P-site tRNA from its codon, and formation of a complex with an overlapping codon, the process known as P-site tRNA slippage. We propose that this process is central to all known cases of +1 ribosomal frameshifting, including that required for the decoding of the yeast transposable element Ty3. An earlier model for the decoding of this element proposed 'out-of-frame' binding of A-site tRNA without preceding P-site tRNA slippage.
authors.affiliation: Department of Human Genetics, University of Utah, 15N 2030E Room 7410, Salt Lake City, UT 84112-5330, USA.
authors.forename: Thomas M
authors.initials: TM
authors.lastname: Hansen
authors.forename: Pavel V
authors.initials: PV
authors.lastname: Baranov
authors.forename: Ivaylo P
authors.initials: IP
authors.lastname: Ivanov
authors.forename: Raymond F
authors.initials: RF
authors.lastname: Gesteland
authors.forename: John F
authors.initials: JF
authors.lastname: Atkins
mesh_terms: D000926:Anticodon; D020029:Base Pairing; D001665:Binding Sites; D003062:Codon / Q000502:physiology*; D018388:Codon, Terminator; D004251:DNA Transposable Elements; D004926:Escherichia coli; D018965:Frameshifting, Ribosomal; D016366:Open Reading Frames; D010957:Plasmids; D012333:RNA, Messenger / Q000378:metabolism; D012343:RNA, Transfer / Q000378:metabolism; D012270:Ribosomes / Q000235:genetics / Q000378:metabolism / Q000502:physiology*
chemical_list: D000926:Anticodon; D003062:Codon; D018388:Codon, Terminator; D004251:DNA Transposable Elements; D012333:RNA, Messenger; D012343:RNA, Transfer