Perfect phylogeny haplotyper: haplotype inferral using a tree model.
We have developed an efficient program, the Perfect Phylogeny Haplotyper (PPH) that takes in unphased population genotype data, and determines if that data can be explained by haplotype pairs that could have evolved on a perfect phylogeny.
Chung
Ren Hua
RH
Department of Computer Science, 3051 Engineering II, University of California, One Shields Avenue, Davis, CA 95616, USA.
Gusfield
Dan
D
D000465:Algorithms; D020869:Gene Expression Profiling / Q000379:methods*; D014644:Genetic Variation / Q000235:genetics*; D006239:Haplotypes / Q000235:genetics*; D020407:Internet; D008957:Models, Genetic; D010802:Phylogeny; D012984:Software