title: RNA interference by production of short hairpin dsRNA in ES cells, their differentiated derivatives, and in somatic cell lines.
abstract: dsRNA of several hundred nucleotides in length is effective at interfering with gene expression in mouse oocytes, pre-implantation embryos, and embryonic stem (ES) cells but is not as efficient in differentiated cell lines. Here we describe a method to achieve RNA interference in totipotent and differentiated ES cells together with a wide range of other mammalian cell types that is both simple and efficient. It utilizes a linearized plasmid that directs the expression of a hairpin RNA with a 22-nucleotide-paired region. This molecule has a 13-nucleotide 5' overhang that would be subject to capping on its 5' phosphoryl group and thus differs from the ideal structure suggested for effective small interfering RNAs. Thus, it appears either that the structure of small inhibitory RNA molecules may not need to be as precise as previously thought or that such a transcript is efficiently processed to a form that is effective in interfering with gene expression.
authors.affiliation: Cyclacel Ltd., Babraham, Cambridgeshire, UK.
authors.forename: J B
authors.initials: JB
authors.lastname: Grabarek
authors.forename: F
authors.initials: F
authors.lastname: Wianny
authors.forename: B
authors.initials: B
authors.lastname: Plusa
authors.forename: M
authors.initials: M
authors.lastname: Zernicka-Goetz
authors.forename: D M
authors.initials: DM
authors.lastname: Glover
mesh_terms: D000818:Animals; D002454:Cell Differentiation / Q000235:genetics; D002460:Cell Line; D018507:Gene Expression Regulation, Developmental / Q000235:genetics*; D006822:Hybrid Cells; D051379:Mice / Q000235:genetics; D010957:Plasmids / Q000235:genetics / Q000378:metabolism; D034622:RNA Interference; D012330:RNA, Double-Stranded / Q000378:metabolism*; D013234:Stem Cells / Q000166:cytology / Q000378:metabolism*; D014162:Transfection / Q000379:methods
chemical_list: D012330:RNA, Double-Stranded