title: Perfect phylogeny haplotyper: haplotype inferral using a tree model.
abstract: We have developed an efficient program, the Perfect Phylogeny Haplotyper (PPH) that takes in unphased population genotype data, and determines if that data can be explained by haplotype pairs that could have evolved on a perfect phylogeny.
authors.affiliation: Department of Computer Science, 3051 Engineering II, University of California, One Shields Avenue, Davis, CA 95616, USA.
authors.forename: Ren Hua
authors.initials: RH
authors.lastname: Chung
authors.forename: Dan
authors.initials: D
authors.lastname: Gusfield
mesh_terms: D000465:Algorithms; D020869:Gene Expression Profiling / Q000379:methods*; D014644:Genetic Variation / Q000235:genetics*; D006239:Haplotypes / Q000235:genetics*; D020407:Internet; D008957:Models, Genetic; D010802:Phylogeny; D012984:Software