Molecular evolution of mammalian ribonucleases 1.
There have been many studies on the chemistry of mammalian pancreatic ribonucleases (ribonucleases 1), but the functional biology of this family of homologous proteins is still largely unknown. Many studies have been performed on the molecular evolution and properties of this enzyme from species belonging to a large number of mammalian taxa, including paralogous gene products resulting from recent gene duplications. Novel ribonuclease 1 sequences were determined for three rodent species (gundi, brush-tailed porcupine, and squirrel), rabbit, a fruit bat, elephant, and aardvark, and the new sequences were used for deriving most parsimonious networks of ribonucleases from different mammalian orders, including earlier determined nucleotide sequences and also a larger set of protein sequences. Weak support for interordinal relationships were obtained, except for an Afrotheria clade containing elephant and aardvark. Results of current analyses and also those obtained 20 years ago on amino acid sequences confirm conclusions derived recently from larger data sets of other molecules. Several examples of recent gene duplications in ribonucleases 1 are discussed, with respect to illustrate the concepts of orthology and paralogy. Previously evidence was presented for extensive parallelism between sequence regions with attached carbohydrate (about one quarter of the molecule) of unrelated species with cecal digestion (pig and guinea pig). These features are also present in the sequences of elephant and fruit bat, species with cecal digestion, but with a very low ribonuclease content in their pancreas.
Dubois
Jean-Yves F
JY
Department of Biochemistry, University of Groningen, Groningen, The Netherlands. dubois@farm.rug.nl
Ursing
Björn M
BM
Kolkman
Joost A
JA
Beintema
Jaap J
JJ
D000818:Animals; D001483:Base Sequence; D017931:DNA Primers / Q000235:genetics; D019143:Evolution, Molecular; D008322:Mammals / Q000145:classification*; D008969:Molecular Sequence Data; D010802:Phylogeny; D012259:Ribonuclease, Pancreatic / Q000145:classification* / Q000235:genetics; D020539:Sequence Analysis, Protein
D017931:DNA Primers; D012259:Ribonuclease, Pancreatic