Decision tree SAR models for developmental toxicity based on an FDA/TERIS database.
Humans are exposed to thousands of environmental chemicals for which no developmental toxicity information is available. Structure-activity relationships (SARs) are models that could be used to efficiently predict the biological activity of potential developmental toxicants. However, at this time, no adequate SAR models of developmental toxicity are available for risk assessment. In the present study, a new developmental database was compiled by combining toxicity information from the Teratogen Information System (TERIS) and the Food and Drug Administration (FDA) guidelines. We implemented a decision tree modeling procedure, using Classification and Regression Tree software and a model ensemble approach termed bagging. We then assessed the empirical distributions of the prediction accuracy measures of the single and ensemble-based models, achieved by repeating our modeling experiment many times by repeated random partitioning of the working database. The decision tree developmental SAR models exhibited modest prediction accuracy. Bagging tended to enhance the accuracy of prediction. Also, the model ensemble approach reduced the variability of prediction measures compared to the single model approach. Further research with data derived from animal species- and endpoint-specific components of an extended and refined FDA/TERIS database has the potential to derive SAR models that would be useful in the developmental risk assessment of the thousands of untested chemicals.
Department of Environmental and Occupational Health, University of Pittsburgh, A734 Crabtree Hall, Pittsburgh, PA 15261, USA. nbsl@pitt.edu
N B
NB
Sussman
V C
VC
Arena
S
S
Yu
S
S
Mazumdar
B P
BP
Thampatty
D000014:Abnormalities, Drug-Induced; D055598:Chemical Phenomena; D002627:Chemistry, Physical; D019992:Databases as Topic; D016208:Databases, Factual; D003663:Decision Trees; D004781:Environmental Exposure; D006801:Humans; D008956:Models, Chemical; D019055:No-Observed-Adverse-Effect Level; D012984:Software; D013329:Structure-Activity Relationship; D013723:Teratogens; D018675:Toxicity Tests; D014481:United States; D014486:United States Food and Drug Administration
D013723:Teratogens