SCide: identification of stabilization centers in proteins.
CONCLUSIONS
SCide is a program to identify stabilization centers from known protein structures. These are residues involved in cooperative long-range contacts, which can be formed between various regions of a single polypeptide chain, or they can belong to different peptides or polypeptides in a complex. The server takes a PDB file as an input, and the result is presented in graphical or text format.


BACKGROUND
SCide is available on the web at http://www.enzim.hu/scide. The source code can be obtained from the authors on request.
Dosztányi
Zsuzsanna
Z
Institute of Enzymology Biological Research Center, Hungarian Academy of Sciences, PO Box 7, Budapest, H-1518, Hungary.
Magyar
Csaba
C
Tusnády
Gábor
G
Simon
István
I
D000595:Amino Acid Sequence; D001665:Binding Sites; D036022:Capsid Proteins / Q000737:chemistry; D017124:Conserved Sequence; D004355:Drug Stability; D016247:Information Storage and Retrieval / Q000379:methods; D008969:Molecular Sequence Data; D011485:Protein Binding; D017434:Protein Structure, Tertiary; D011506:Proteins / Q000737:chemistry*; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software; D013329:Structure-Activity Relationship; D014584:User-Computer Interface
D036022:Capsid Proteins; D011506:Proteins; C442459:VP2 protein, Foot-and-mouth disease virus