Evolutionary conservation predicts function of variants of the human organic cation transporter, OCT1.
The organic cation transporter, OCT1, is a major hepatic transporter that mediates the uptake of many organic cations from the blood into the liver where the compounds may be metabolized or secreted into the bile. Because OCT1 interacts with a variety of structurally diverse organic cations, including clinically used drugs as well as toxic substances (e.g., N-methylpyridinium, MPP(+)), it is an important determinant of systemic exposure to many xenobiotics. To understand the genetic basis of extensive interindividual differences in xenobiotic disposition, we functionally characterized 15 protein-altering variants of the human liver organic cation transporter, OCT1, in Xenopus oocytes. All variants that reduced or eliminated function (OCT1-R61C, OCT1-P341L, OCT1-G220V, OCT1-G401S, and OCT1-G465R) altered evolutionarily conserved amino acid residues. In general, variants with decreased function had amino acid substitutions that resulted in more radical chemical changes (higher Grantham values) and were less evolutionarily favorable (lower blosum62 values) than variants that maintained function. A variant with increased function (OCT1-S14F) changed an amino acid residue such that the human protein matched the consensus of the OCT1 mammalian orthologs. Our results indicate that changes at evolutionarily conserved positions of OCT1 are strong predictors of decreased function and suggest that a combination of evolutionary conservation and chemical change might be a stronger predictor of function.
Shu
Yan
Y
Department of Biopharmaceutical Sciences, Division of Clinical Pharmacology and Experimental Therapeutics, University of California, San Francisco, CA 94143-0446, USA.
Leabman
Maya K
MK
Feng
Bo
B
Mangravite
Lara M
LM
Huang
Conrad C
CC
Stryke
Doug
D
Kawamoto
Michiko
M
Johns
Susan J
SJ
DeYoung
Joseph
J
Carlson
Elaine
E
Ferrin
Thomas E
TE
Herskowitz
Ira
I
Giacomini
Kathleen M
KM
D000483:Alleles; D000595:Amino Acid Sequence; D000818:Animals; D002460:Cell Line; D017124:Conserved Sequence; D004285:Dogs; D019143:Evolution, Molecular; D005787:Gene Frequency; D014644:Genetic Variation; D006801:Humans; D007668:Kidney; D018613:Microscopy, Confocal; D008958:Models, Molecular; D008969:Molecular Sequence Data; D027702:Organic Cation Transporter 1 / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism; D017433:Protein Structure, Secondary; D011994:Recombinant Proteins / Q000737:chemistry / Q000378:metabolism; D014162:Transfection
D027702:Organic Cation Transporter 1; D011994:Recombinant Proteins